SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13180 | AT | Annotation by Michelle Graham. TAIR10: NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | chr3:4236326-4239966 REVERSE LENGTH=523 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG1122 | KOG | tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) | JGI | ISS | |
| PTHR22807 | Panther | NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING | JGI | ISS | |
| PTHR22807:SF12 | Panther | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) | JGI | ISS | |
| PF01029 | PFAM | NusB family | JGI | ISS | |
| PF01189 | PFAM | NOL1/NOP2/sun family | JGI | ISS | |
| UniRef100_G7KEH7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA small subunit methyltransferase n=1 Tax=Medicago truncatula RepID=G7KEH7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JJK1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJK1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g47060 not represented in the dataset |
Glyma02g47060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g01691 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g301000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g47060.1 sequence type=CDS gene model=Glyma02g47060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCGGGTGCTGTATATGGGTTTACCTTTCCCCGCAGAACCCCAGAAAACTGCACCTTCTTCTTCTTCTTCTTCTTCTCCCTCGAAGCCATTGAAGCTTCCCCATAGAACCTGCAGCACCAACATATCCATTCCCAGCACTGCCAAAGGCGGTGGCAATCGTTTGCTGAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGCTTTCGCACTCGGGAATTGAATCACCATGATCTTAGATTGGTCACAGACATTGTTGGGGGTACGATTCGCTGGAGAAGATATCTTGATCATCTTATCAGTTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTAAGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCACCTTATGCTGTCGTTGATGAGAACGTGAAGCTTGCTAAATTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATTCTCCGAAAGCTAGTTGTGCTGAAGGAGAAGGAAAGTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAAGAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCATTGAAGGTCCCACACAAACTTTCACCGCATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTATTATTCAAGCTGGTCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACTGCCATCCATGCTGATCTTCGTACATTACCTGATAGTGGACAGCTTAAGAGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGTTGGAACAAGAATCTGGAGGATATGGAACAACTGAAGGAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGACAGGGTAGTGGCATTTCTTGCAAGACATTCGGATTTCCACATTGATCCAGTAGACAGATATGTTCCTCCTGATTTTGAGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGCTCCTTTGCAGCTCGTTTAGTACGTGATTTATAG
>Glyma02g47060.1 sequence type=predicted peptide gene model=Glyma02g47060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARVLYMGLPFPAEPQKTAPSSSSSSSPSKPLKLPHRTCSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFFFSNPVKHSLDGSFAARLVRDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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