SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55880 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal-5'-phosphate-dependent enzyme family protein | chr1:20899292-20901140 REVERSE LENGTH=421 | SoyBase | E_val: 8.00E-178 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006535 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1481 | KOG | Cysteine synthase | JGI | ISS | |
| PTHR10314 | Panther | PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY | JGI | ISS | |
| PTHR10314:SF32 | Panther | CYSTEINE SYNTHASE | JGI | ISS | |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | ISS | |
| UniRef100_I1M6G6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=I1M6G6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233701A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233701A related cluster n=1 Tax=unknown RepID=UPI000233701A | SoyBase | E_val: 0 | ISS |
|
Glyma02g46950 not represented in the dataset |
Glyma02g46950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g01780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g299900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46950.2 sequence type=CDS gene model=Glyma02g46950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTGGAAGTAAAAACATCGGAGGCCAAGTGACGAATAGAGATAAGGAAAGAACACGACACTGGGACTGCGGAGGCAACAAGGGACACAAAAGATTCGAGTTGGGAAGGAAGGAGTTGAGAGTTTTTTTTTTGAAGAAGAACAACAAATCAAGCAAGAAGGTGGACGCCATAGGCAACACTCCTTTGATGATTCGGATCAACAGCCTCTCCGCCATTCTCGGCAAGTGCGAGTTCTTAAACCCCGGAGGCAGCGTCAATGACCGTGTTGCTGTTCATATTATTCAAGAGGCTCTGGAATCTGACCAGCTACGTCCAGATGGAATTGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCCACTATTGCTCCTGCGTATGGATGCAGGACCCACGTGGTTATTCCGGATGATGCTGCCATTGAGAAATCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGAGACCGGTGTCCATTACCCACAAAGACCATTTTTTTGCATTGAAGCGTACAAATTCACAACAATTGAATGGCAAGGAGGACACCGAGAAAATAAATGGTTATGAATCTGATGGATGCAGTTACAGCTCTCTGTTTCCTGAAGATTGCCAAGGTGGCTTTTTTGCTGATCAGTTTGAGAACCTAGCGAACTTCAGGGCCCATTATGAGGGTACAGGGCCTGAGATTTGCAGCAGGCACTGGTGGTACTGTGGCTGGTGTTTCAAAGTTTCTTCAGGTTCACCACAACCCCCCTTCCTCCACGTTGTAGATGTTGTCGTTTTGAGTGTTAAAGTTGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAGATGGAAGAAGACTTAAGAATCCATTTGACACTATAACGGAAGGAATTGGAATTAACAGGATAACAAGGAATTTTGCAATGGCAAAACTTGATGGGGCCTTTAGAGGCACCGATAGGGAGGCTGTTGAAATGTCTAGGTTTCTTTTGAAGAACGATGGTCTCTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTTGGAGCAGTAAGAGTAGCGCAAGCAATTGGCCCTGGTCACACAATTGTAACCATTCTCTGCGACAGTGGAATGAGACATTTGAGCAAATTCTATGATGCTGAATACTTGTCTCTGCTTGGTTTGACACCGAAAGCAACTGGTTTGGAGCTCTTAGGCATCAAATGA
>Glyma02g46950.2 sequence type=predicted peptide gene model=Glyma02g46950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCGSKNIGGQVTNRDKERTRHWDCGGNKGHKRFELGRKELRVFFLKKNNKSSKKVDAIGNTPLMIRINSLSAILGKCEFLNPGGSVNDRVAVHIIQEALESDQLRPDGIVTEGSAGSTAISIATIAPAYGCRTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFFALKRTNSQQLNGKEDTEKINGYESDGCSYSSLFPEDCQGGFFADQFENLANFRAHYEGTGPEICSRHWWYCGWCFKVSSGSPQPPFLHVVDVVVLSVKVEKNPNIKCFLVDPPGSGLFNRVTRAVMYTKEEADGRRLKNPFDTITEGIGINRITRNFAMAKLDGAFRGTDREAVEMSRFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYDAEYLSLLGLTPKATGLELLGIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
