Glyma02g46860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g46860): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g46860): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g46860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50690640
stop:	50694213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40580	AT	Annotation by Michelle Graham. TAIR10: 20S proteasome beta subunit PBB2 \| chr5:16248511-16250451 REVERSE LENGTH=274	SoyBase	E_val: 1.00E-178	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005839	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG0173	KOG	20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1	JGI		ISS
KOG0177	KOG	20S proteasome, regulatory subunit beta type PSMB2/PRE1	JGI		ISS
PTHR11599	Panther	PROTEASOME SUBUNIT ALPHA/BETA	JGI		ISS
PTHR11599:SF1	Panther	PROTEASOME BETA SUBUNIT	JGI		ISS
PF00227	PFAM	Proteasome subunit	JGI		ISS
UniRef100_I1JJI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit beta type n=1 Tax=Glycine max RepID=I1JJI4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JJI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit beta type n=1 Tax=Glycine max RepID=I1JJI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46860 not represented in the dataset	Glyma02g46860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46860

Paralog	Evidence	Comments
Glyma14g01850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g299000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46860

Limit To All Plant Sequences

>Glyma02g46860.4   sequence type=transcript   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATATATAGGGAGTGGTTTGCAATTTGTATAAACTTGCCACGTGACCCATTCTTCAAGCAATTGAGGATTCACAAATGATAATCATCTCTACTGACCAAATCTGAAGAAAATTGCTTTCTCTTTGGTTCCTAGCTCGCACTCTCTCTACGCACGCCTCAACATCCCTTCTCTGCTCCATTCATTATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAACAATCATTCCAAAAAAAATTGGTGTATGAGTATGAAACTTGATTAGTGCAATGGCTGTGATATTTGATTTTGTACTTTCACAACTTTGGCTTTTATTACCAAAATTTATTTGAATTCAATTAGATCATTGCAAATTGTTCCTCAAATTTCTTCATTTGGTTGGATTTTGGCTAGAAAATGCTTAACAAAACACCAAATATATACAATTTGATTGATGAAAGATGTTACTTGTTTTGTTTTTTTA

>Glyma02g46860.5   sequence type=transcript   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATATATAGGGAGTGGTTTGCAATTTGTATAAACTTGCCACGTGACCCATTCTTCAAGCAATTGAGGATTCACAAATGATAATCATCTCTACTGACCAAATCTGAAGAAAATTGCTTTCTCTTTGGTTCCTAGCTCGCACTCTCTCTACGCACGCCTCAACATCCCTTCTCTGTTCACTTGCTTTGCAGGCTCCATTCATTATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAACAATCATTCCAAAAAAAATTGGTGTATGAGTATGAAACTTGATTAGTGCAATGGCTGTGATATTTGATTTTGTACTTTCACAACTTTGGCTTTTATTACCAAAATTTATTTGAATTCAATTAGATCATTGCAAATTGTTCCTCAAATTTCTTCATTTGGTTGGATTTTGGCTAGAAAATGCTTAACAAAACACCAAATATATACAATTTGATTGATGAAAGATGTTACTTGTTTTGTTTTTTTA

Coding sequences of Glyma02g46860

Limit To All Plant Sequences

>Glyma02g46860.3   sequence type=CDS   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTGTAAGTAAGCATACAAGGCTCACAGCCTTAGAGGAGTGCATTTGA

>Glyma02g46860.4   sequence type=CDS   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAA

>Glyma02g46860.5   sequence type=CDS   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAA

Predicted protein sequences of Glyma02g46860

Limit To All Plant Sequences

>Glyma02g46860.3   sequence type=predicted peptide   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSVSKHTRLTALEECI*

>Glyma02g46860.4   sequence type=predicted peptide   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTYVNPKGFDFPKKTEVLLTKITPLKEKVEVIEGDAMEE*

>Glyma02g46860.5   sequence type=predicted peptide   gene model=Glyma02g46860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTYVNPKGFDFPKKTEVLLTKITPLKEKVEVIEGDAMEE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain