Glyma02g46690 - SoyBase

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Report for Sequence Feature Glyma02g46690

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50580953
stop:	50586936
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26640	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor family protein \| chr4:13437298-13440693 REVERSE LENGTH=557	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009961	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to 1-Aminocyclopropane-1-carboxylic Acid	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B0LUR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JJG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46690

Paralog	Evidence	Comments
Glyma14g01980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g297400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46690

Limit To All Plant Sequences

>Glyma02g46690.3   sequence type=transcript   gene model=Glyma02g46690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAGCTTAGGATCGCTCGACATTCTCCTTTTATTTATTTTAATGTCAGTGTTGTTTTTCACATAATGAATCTTCTTTTTTGTTGGTGCTTGCCCTTTTTGTTTGTTTTTGTTTCAACGGTGCATCAGAGTGCAATGAAAAGTCTTCTTCTCTTCCTTTACTATTTATATACGTGGAACAAACGAATCAATGCATTGCCAACAATTAGTGGATCGATTTTAGTTATGTGTGCTGTGAGAATAGTATAAGGAATGCCAGAAAGATAGTGGGTCTAGATTTTGTGAAAGGACTTGTTTCTAGACGTTAATTGTCTGGATGGTCCTAATTTGAGTCGAATTCTGTGCTTCATTCATGTGGGAATGTCTTTTCTTTGTTATGATTGATTGTTTATATAACTAACTTTTGCATATTGTAATGTACTATGCCATCTTTGTCAAACGGACTCCAAATAAACAACATGCAATATTATCAGCAGGAGAAAATGGAGAACTTTGCTTACGCTCAATTATAGTGGGCCGCTTGCATCACTGGCTGATAAAACTGTTCAATTAGTTGGCTTATTCATAAGATTATATATATGCTCTCTTTCCGCTGTTATTACTGATTTCATAGGTTGACTGATTGCTGTTTGAGGCCTTAGGGTTTGCAGGTGGAGGCTTCACCAACTACAGGGTCCCTCCGCAAGCTCCAACAAACAGTACATGGTTCTATGGCTTCTGCTGCCTCTGCTACATTTCCAGTAACCACTGCCTGCTTCAATACCAATACTGTTGATGCCAGAAAATCAAGTTTCTTTGAGTTCAAACCACTCAATAGATCGAATAAGGTTCCTGCAGACTTCAACAATCATGTAAGTAAACAGTCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAACAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTAGTGCTAGTGCTCCTGTTGATGTTGATTTGGATGAAATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGTTGAGGTTAGAGGCAGTGGACTTTCTGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAGGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAATCAAGCTGCCGATACTCTACTGGTACTGTTATGTATATTCAAGGAGAGAGATCTGATAAGGCTTCTTTGGCTGGCCGAGATGACAAAGCATCCACTATGTATGGTCAGGTGTCTCATGCTGCTGAGCCCAACAGTACTCCAGAGTCATCACCTGTAGCCACAAATGATGATGGTTTAGAGGGTGCTGGGTTTGTGTCAAACAGGAATAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCAGTAGTTAAGCCTATCCGGGAACCACGTGTTGTTGTACAAACTTTGAGTGAGGTTGACATATTGGATGATGGGTACCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGCTATTACAAATGCACAAATGCTGGTTGCCCTGTCCGAAAACATGTGGAGAGAGCATCTCATGATCCGAAAGCAGTGATAACCACATACGAGGGTAAACACAATCATGATGTACCTGCTGCAAGGAATAGCAGCCATGACATGGCAGTACCAGCAGCTACAGCAGGTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGAATGGGAATTAGCTCAGCTGCTGAACATAGATCAAATGGGCAAGGGAAAATGCTGCATTCAGAGTTGGGGGAGACACAAACTCACGCCAGCAATTCCAACTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCATGCCCACAGAGCATGGGAAGAATACTATTGGGTCCATGAAGTTGATTACACAACAGATATTAAAATAAAAACTGAGTAACAATTTGCTTTTTTCTTCTTATTTTTGGCGGGTATAGCTTCAAAGGCGTAACATCTCATTTTCTGTAAGAAAATGCAGATAGTTCTTTTATGCTTATAGCACTATTCGAGAGCTGCTGTTTAGTAGAATTGGTAGCAGCTCCATCTTGACTTTTAAATCTAATTGCCGTTTGTAATTGTATAATTATATCCAAATTCTTCTGTATAAATATGAAGCCGATATCAAAGTTACCTCCACAAAACCTTAGTCCTCAGTGCACTGGTTACAAGTCGTACATACCCCGTGATTCATGACCTGTTTTTGATATGGTGAAATTGAAGTGCACCGTGCACTTGATGGTACCATGAATTTG

Coding sequences of Glyma02g46690

Limit To All Plant Sequences

>Glyma02g46690.1   sequence type=CDS   gene model=Glyma02g46690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCGCCGCCACCAACTCCGGCGAACCCCGCCCGAGCTCGGAGCTTCAGACAACTGGGGAATCCGAGGATCCGAATCGAAGCGGGTCGGGACAGAATTCGACGGCGAGGTATAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTCAGTCCGACGTCGTTTCTGGAATCCCCTGTTCTTCTTTCCAACATGAAGGTGGAGGCTTCACCAACTACAGGGTCCCTCCGCAAGCTCCAACAAACAGTACATGGTTCTATGGCTTCTGCTGCCTCTGCTACATTTCCAGTAACCACTGCCTGCTTCAATACCAATACTGTTGATGCCAGAAAATCAAGTTTCTTTGAGTTCAAACCACTCAATAGATCGAATAAGGTTCCTGCAGACTTCAACAATCATGTAAGTAAACAGTCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAACAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTAGTGCTAGTGCTCCTGTTGATGTTGATTTGGATGAAATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGTTGAGGTTAGAGGCAGTGGACTTTCTGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAGGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAATCAAGCTGCCGATACTCTACTGGTACTGTTATGTATATTCAAGGAGAGAGATCTGATAAGGCTTCTTTGGCTGGCCGAGATGACAAAGCATCCACTATGTATGGTCAGGTGTCTCATGCTGCTGAGCCCAACAGTACTCCAGAGTCATCACCTGTAGCCACAAATGATGATGGTTTAGAGGGTGCTGGGTTTGTGTCAAACAGGAATAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCAGTAGTTAAGCCTATCCGGGAACCACGTGTTGTTGTACAAACTTTGAGTGAGGTTGACATATTGGATGATGGGTACCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGCTATTACAAATGCACAAATGCTGGTTGCCCTGTCCGAAAACATGTGGAGAGAGCATCTCATGATCCGAAAGCAGTGATAACCACATACGAGGGTAAACACAATCATGATGTACCTGCTGCAAGGAATAGCAGCCATGACATGGCAGTACCAGCAGCTACAGCAGGTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGAATGGGAATTAGCTCAGCTGCTGAACATAGATCAAATGGGCAAGGGAAAATGCTGCATTCAGAGTTGGGGGAGACACAAACTCACGCCAGCAATTCCAACTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCATGCCCACAGAGCATGGGAAGAATACTATTGGGTCCATGA

>Glyma02g46690.3   sequence type=CDS   gene model=Glyma02g46690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCTGCCTCTGCTACATTTCCAGTAACCACTGCCTGCTTCAATACCAATACTGTTGATGCCAGAAAATCAAGTTTCTTTGAGTTCAAACCACTCAATAGATCGAATAAGGTTCCTGCAGACTTCAACAATCATGTAAGTAAACAGTCTACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAACAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTAGTGCTAGTGCTCCTGTTGATGTTGATTTGGATGAAATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGTTGAGGTTAGAGGCAGTGGACTTTCTGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAGGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAATCAAGCTGCCGATACTCTACTGGTACTGTTATGTATATTCAAGGAGAGAGATCTGATAAGGCTTCTTTGGCTGGCCGAGATGACAAAGCATCCACTATGTATGGTCAGGTGTCTCATGCTGCTGAGCCCAACAGTACTCCAGAGTCATCACCTGTAGCCACAAATGATGATGGTTTAGAGGGTGCTGGGTTTGTGTCAAACAGGAATAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCAGTAGTTAAGCCTATCCGGGAACCACGTGTTGTTGTACAAACTTTGAGTGAGGTTGACATATTGGATGATGGGTACCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGCTATTACAAATGCACAAATGCTGGTTGCCCTGTCCGAAAACATGTGGAGAGAGCATCTCATGATCCGAAAGCAGTGATAACCACATACGAGGGTAAACACAATCATGATGTACCTGCTGCAAGGAATAGCAGCCATGACATGGCAGTACCAGCAGCTACAGCAGGTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGAATGGGAATTAGCTCAGCTGCTGAACATAGATCAAATGGGCAAGGGAAAATGCTGCATTCAGAGTTGGGGGAGACACAAACTCACGCCAGCAATTCCAACTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCATGCCCACAGAGCATGGGAAGAATACTATTGGGTCCATGA

Predicted protein sequences of Glyma02g46690

Limit To All Plant Sequences

>Glyma02g46690.1   sequence type=predicted peptide   gene model=Glyma02g46690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAAATNSGEPRPSSELQTTGESEDPNRSGSGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEASPTTGSLRKLQQTVHGSMASAASATFPVTTACFNTNTVDARKSSFFEFKPLNRSNKVPADFNNHVSKQSTQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVDVDLDEINHKGNTATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDKASLAGRDDKASTMYGQVSHAAEPNSTPESSPVATNDDGLEGAGFVSNRNNEEVDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAATAGGQTRIKLEESDTISLDLGMGISSAAEHRSNGQGKMLHSELGETQTHASNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPSLNHSSYPCPQSMGRILLGP*

>Glyma02g46690.3   sequence type=predicted peptide   gene model=Glyma02g46690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAASATFPVTTACFNTNTVDARKSSFFEFKPLNRSNKVPADFNNHVSKQSTQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVDVDLDEINHKGNTATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDKASLAGRDDKASTMYGQVSHAAEPNSTPESSPVATNDDGLEGAGFVSNRNNEEVDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAATAGGQTRIKLEESDTISLDLGMGISSAAEHRSNGQGKMLHSELGETQTHASNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPSLNHSSYPCPQSMGRILLGP*

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