Report for Sequence Feature Glyma02g46600
Feature Type: gene_model
Chromosome: Gm02
Start: 50510761
stop: 50514066
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g46600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G50590 AT
Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr1:18732378-18734053 REVERSE LENGTH=310
SoyBase E_val: 2.00E-146 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR13903 Panther
PIRIN-RELATED
JGI ISS
PF02678 PFAM
Pirin
JGI ISS
PF05726 PFAM
Pirin C-terminal cupin domain
JGI ISS
UniRef100_G7K4C1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pirin-like protein n=1 Tax=Medicago truncatula RepID=G7K4C1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JJF8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJF8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g46600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g46600
Paralog Evidence Comments
Glyma14g02060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g46600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g296500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g46600
Coding sequences of Glyma02g46600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g46600.1 sequence type=CDS gene model=Glyma02g46600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGGACCAAGATATTTGCAGTTACATTAATGAACCTCGTCTTGTAGCCAGAAAGTTCTTGGCCAGACCTCAGCATGAGGGTGTTGGGGCTGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGTACTTTGATCCTTTCATTGTCTTGGATGAATTCTCAGTCACCGCTCCTGCTGGGTTTCCTGATCATCCACATAGAGGATTTGAGACAGTCACATACATGTTGCAGGGAGCTATAACGCATGAAGATTTTGAAGGACATAAGGGAACAATTGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTCCAGCTGTGGATCAACCTTGCTTCAAAACATAAAATGATTGAGCCAAGGTACCAGGAAATGTTGAGCAAGGACATAGCTGAAACTATGATAGATGGTATCAAAGTTAGAGTTATAGCAGGGGAAGCTCTTGGAATAAAGTCACCAATCTACACAAGGACACCAACCATGTACTTGGATTTTACTCTTAAACCTGGTGCTCACTTGCAACAAATTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTTTTTGGAAACCAAAAATCCCAACCTGTGACCTCTCACCATATACTTCTTCTTGGTTCTGGGGATGGCCTGGAGGCATGGAACAAATCTTCTAAGGTCCTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGTGAATCTGTGGTGCAATTTGGACCTTTTGTGATGAATACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAACTATACCAACGGATTTGAGAAAGCTAGACATTGGAGGTCTGAAAGTGCAATTAGTCTTGATTATTGA
Predicted protein sequences of Glyma02g46600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g46600.1 sequence type=predicted peptide gene model=Glyma02g46600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPDQDICSYINEPRLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFIVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGAHLQQIIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGESVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSESAISLDY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
