Glyma02g46530 - SoyBase

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Report for Sequence Feature Glyma02g46530

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50450604
stop:	50453886
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55280	AT	Annotation by Michelle Graham. TAIR10: homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 \| chr5:22420740-22422527 REVERSE LENGTH=433	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0043572	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid fission	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
PF00091	PFAM	Tubulin/FtsZ family, GTPase domain	JGI		ISS
PF12327	PFAM	FtsZ family, C-terminal domain	JGI		ISS
UniRef100_I1JJF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJF1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O65875	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FtsZ protein n=1 Tax=Pisum sativum RepID=O65875_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46530 not represented in the dataset	Glyma02g46530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46530

Paralog	Evidence	Comments
Glyma14g02110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g295800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g46530

Limit To All Plant Sequences

>Glyma02g46530.1   sequence type=CDS   gene model=Glyma02g46530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGCTTCATCCCCTCACAAACCCAAACGCAAACGAGCTTCTCTCACTCTCATGCTCTTCTATATTCCACCACAATGCACTCACAACCTCCGTTTCTCTCAACCCCAGAACAACAAAAATTGCTCCTCAACGCCTAAGTCGTCGTTTCGGGTCCGTGAGATGCTCTTACGCTTACGTAGATAACGCCAAAATTAAGGTTGTCGGCATCGGTGGTGGCGGCAACAATGCCGTTAATCGCATGATCGGTAGTGGTTTGCAGGGTGTAGACTTCTATGCAATAAATACCGATGCTCAGGCACTGTTAAATTCTGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAGGTACGGGCGGGAATCCACTTTTGGGGGAACAAGCTGCAGAGGAATCAAGAGATGCTATTGCTGATGCTCTTAAAGGATCAGATTTGGTGTTTATAACGGCTGGGATGGGTGGGGGAACCGGGTCTGGTGCTGCCCCAGTTGTAGCCCAAATATCAAAAGAGGCAGGTTACTTGACTGTAGGTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAGGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTCAGGATGCTTTCCGTCTTGCAGATGACGTTCTACGGCAAGGAGTACAGGGAATATCAGACATTATAACTGTACCTGGACTTGTCAATGTGGATTTTGCAGATGTAAAAGCTGTGATGAAAGACTCTGGGACTGCAATGCTTGGAGTAGGTGTTTCCTCCGGTAAAAACCGAGCAGAAGAAGCAGCCGAACAGGCTACTTTGGCTCCTTTAATTGGATCCTCTATTCAGTCAGCTACTGGGGTAGTGTATAATATTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCGTTGATGATCGCTACACGGGGGAGATTCACGTGACTATCATTGCAACTGGCTTCTCACAGTCTTTTCAGAAGAAGTTGCTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAAGGTGGCTGAGGGCCAAGAAAGCAAGGCAGTCCCTCCTCCCCTCAAGTCCTCAAACAAGGTTGAATCTAGACCATCCCCGCGAAAGCTCTTTTTTTAG

Predicted protein sequences of Glyma02g46530

Limit To All Plant Sequences

>Glyma02g46530.1   sequence type=predicted peptide   gene model=Glyma02g46530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMLHPLTNPNANELLSLSCSSIFHHNALTTSVSLNPRTTKIAPQRLSRRFGSVRCSYAYVDNAKIKVVGIGGGGNNAVNRMIGSGLQGVDFYAINTDAQALLNSAAENPIKIGEVLTRGLGTGGNPLLGEQAAEESRDAIADALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQAFEAIERLQKNVDTLIVIPNDRLLDIADEQMPLQDAFRLADDVLRQGVQGISDIITVPGLVNVDFADVKAVMKDSGTAMLGVGVSSGKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLDKVAEGQESKAVPPPLKSSNKVESRPSPRKLFF*

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