SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55230 | AT | Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 65-1 | chr5:22402716-22405182 FORWARD LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0001578 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule bundle formation | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0031116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of microtubule polymerization | SoyBase | N/A | ISS |
| GO:0043622 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization | SoyBase | N/A | ISS |
| GO:0046785 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule polymerization | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic root development | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0010005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis | SoyBase | N/A | ISS |
| GO:0055028 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG4302 | KOG | Microtubule-associated protein essential for anaphase spindle elongation | JGI | ISS | |
| PTHR19321 | Panther | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | JGI | ISS | |
| PF03999 | PFAM | Microtubule associated protein (MAP65/ASE1 family) | JGI | ISS | |
| UniRef100_G7K8P9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein MAP65-1a n=1 Tax=Medicago truncatula RepID=G7K8P9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001B63CE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B63CE1 related cluster n=1 Tax=unknown RepID=UPI0001B63CE1 | SoyBase | E_val: 0 | ISS |
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Glyma02g46450 not represented in the dataset |
Glyma02g46450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02180 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g295100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46450.4 sequence type=transcript gene model=Glyma02g46450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACACTAACACTGTACTCTGTGTCTTTCTAATAATCTCATCATCTAATCTTATTCTTATGACCCCATTATTATATCCACACTCTACACAACACAACAAAACCTCACTCTCTCTTTCTCTCTCTCTCTCTCTCTTTCACGAACTCACTCACTCAGTCGCTCACGCTCTGTTTCAGATCTGAAGAAGCCACATAACCCTAAGCTTCAAACGGGTAAGTGTCGCTGGGACTTCAATGGCAGTGACCGAAGCTCAAAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAACAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCAAAGTCAAGGGCGCAGCTACTTCAAGCTCTGTCTGATGCTAAGCTTGAGCTTTCCACTCTTCTATCAGCACTTGGAGAAAAGAGCTTTGCTGGAATTCCTGAGAATACTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAAAAAGAAGAAAGAATTAAGGAGTTCTCAGATGTACAGTCACAGATCCAACAAATATGTGGAGAGATAGCCGGGAACTTGAACCTTAATGATGTTTCACCTGCAGTTGATGAGTCTGATTTGTCCCTGAAGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTATGTGCTGTCCTTGGTATAGACTTCTTCACTACTGTAACTGAGGTTCATCCAAGTCTAAATGACTCTACTGGTGTTCAATCCAAGAGCATTAGTAATGACACCCTTGCAAGGCTGGCTAAGACAGTCTTGACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAGTTAATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAGCTCGAAGAGATATTTGTCTGTGCTCATATAGAAGTAGATCCAGATGCTGCCCGGGAGAAGATTATGGCCTTGATTGATTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAGGTCCTCGTGCTAACGGAGGAGCCAATGGTACTCCTAACCGACGGCTATCGCTTAATGCTCATAAAAATGGAAACAGGTCCACATCAAAAGATGGAAAAAGGGATAACAGACTATCTGCTCCGGTGAATTATGTGGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCCATCCCGGCATCACCCTAATGACGAGATCTTCATTTTCAACCCTATAATTTCATCTTTGTAGCATTGTCAAATTACTAGTTACTGCTTTAGGAATTATAATATGGGAGTGACAAGTAATTAGAGAGGAACTGTTCTGAGCTGTGTATGTTCAATTTGCCATTTTGGAGGTTTTCTCAATACATATGCCCTTTAATATGAAAATATACACAGTTAAGTCCTTGCCTTATTCCAAACCCTAG
>Glyma02g46450.3 sequence type=CDS gene model=Glyma02g46450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTGACCGAAGCTCAAAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAACAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCAAAGTCAAGGGCGCAGCTACTTCAAGCTCTGTCTGATGCTAAGCTTGAGCTTTCCACTCTTCTATCAGCACTTGGAGAAAAGAGCTTTGCTGGAATTCCTGAGAATACTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAAAAAGAAGAAAGAATTAAGGAGTTCTCAGATGTACAGTCACAGATCCAACAAATATGTGGAGAGATAGCCGGGAACTTGAACCTTAATGATGTTTCACCTGCAGTTGATGAGTCTGATTTGTCCCTGAAGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTATGTGCTGTCCTTGGTATAGACTTCTTCACTACTGTAACTGAGGTTCATCCAAGTCTAAATGACTCTACTGGTGTTCAATCCAAGAGCATTAGTAATGACACCCTTGCAAGGCTGGCTAAGACAGTCTTGACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAGTTAATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAGCTCGAAGAGATATTTGTCTGTGCTCATATAGAAGTAGATCCAGATGCTGCCCGGGAGAAGATTATGGCCTTGATTGATTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAGGTCCTCGTGCTAACGGAGGAGCCAATGGTACTCCTAACCGACGGCTATCGCTTAATGCTCATAAAAATGGAAACAGGTCCACATCAAAAGATGGAAAAAGGGATAACAGACTATCTGCTCCGGTGAATTATGTGGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCCATCCCGGCATCACCCTAA >Glyma02g46450.4 sequence type=CDS gene model=Glyma02g46450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTGACCGAAGCTCAAAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAGGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAACAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCAAAGTCAAGGGCGCAGCTACTTCAAGCTCTGTCTGATGCTAAGCTTGAGCTTTCCACTCTTCTATCAGCACTTGGAGAAAAGAGCTTTGCTGGAATTCCTGAGAATACTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAAAAAGAAGAAAGAATTAAGGAGTTCTCAGATGTACAGTCACAGATCCAACAAATATGTGGAGAGATAGCCGGGAACTTGAACCTTAATGATGTTTCACCTGCAGTTGATGAGTCTGATTTGTCCCTGAAGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTATGTGCTGTCCTTGGTATAGACTTCTTCACTACTGTAACTGAGGTTCATCCAAGTCTAAATGACTCTACTGGTGTTCAATCCAAGAGCATTAGTAATGACACCCTTGCAAGGCTGGCTAAGACAGTCTTGACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAGTTAATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAGCTCGAAGAGATATTTGTCTGTGCTCATATAGAAGTAGATCCAGATGCTGCCCGGGAGAAGATTATGGCCTTGATTGATTCAGGAAACATTGAACCAACTGAATTACTGGCTGACATGGACAATCAGATAGCAACAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATGCTCAGACATGAACGGGAAGAGGAAAAACGGAGGATGAGGGATCAGAAAAAGCATCACGAGCAGCGAAACACGGAACAAGAAACCATCTTTGGTTCAAGACCCAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGTCAGGAGGTCCTCGTGCTAACGGAGGAGCCAATGGTACTCCTAACCGACGGCTATCGCTTAATGCTCATAAAAATGGAAACAGGTCCACATCAAAAGATGGAAAAAGGGATAACAGACTATCTGCTCCGGTGAATTATGTGGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCCATCCCGGCATCACCCTAA
>Glyma02g46450.3 sequence type=predicted peptide gene model=Glyma02g46450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSTLLSALGEKSFAGIPENTSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLNDVSPAVDESDLSLKKLDEYQSELQELQKEKSERLHKVLEFVSTVHDLCAVLGIDFFTTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTHPEERRLFDHVTCNMSASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQAELEEIFVCAHIEVDPDAAREKIMALIDSGNIEPTELLADMDNQIATAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQETIFGSRPSPARPVSSSKSGGPRANGGANGTPNRRLSLNAHKNGNRSTSKDGKRDNRLSAPVNYVAISKEDAASHVSGTEPIPASP* >Glyma02g46450.4 sequence type=predicted peptide gene model=Glyma02g46450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSTLLSALGEKSFAGIPENTSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLNDVSPAVDESDLSLKKLDEYQSELQELQKEKSERLHKVLEFVSTVHDLCAVLGIDFFTTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTHPEERRLFDHVTCNMSASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQAELEEIFVCAHIEVDPDAAREKIMALIDSGNIEPTELLADMDNQIATAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQETIFGSRPSPARPVSSSKSGGPRANGGANGTPNRRLSLNAHKNGNRSTSKDGKRDNRLSAPVNYVAISKEDAASHVSGTEPIPASP*
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