SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26770 | AT | Annotation by Michelle Graham. TAIR10: Phosphatidate cytidylyltransferase family protein | chr4:13482580-13484697 FORWARD LENGTH=471 | SoyBase | E_val: 0 | ISS |
| GO:0008654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dolichol biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004605 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate cytidylyltransferase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1440 | KOG | CDP-diacylglycerol synthase | JGI | ISS | |
| PTHR13773 | Panther | PHOSPHATIDATE CYTIDYLYLTRANSFERASE | JGI | ISS | |
| PF01148 | PFAM | Cytidylyltransferase family | JGI | ISS | |
| UniRef100_I1JJE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidate cytidylyltransferase n=1 Tax=Glycine max RepID=I1JJE1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336F1E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336F1E related cluster n=1 Tax=unknown RepID=UPI0002336F1E | SoyBase | E_val: 0 | ISS |
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Glyma02g46441 not represented in the dataset |
Glyma02g46441 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g295000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46441.2 sequence type=transcript gene model=Glyma02g46441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGTGAGTGTGTGACAATCAATGATCTACTTTTATGTAACTTTAATAACTATATGTTGGGCACATGCTCATTGTTTCAAAACATCTTGAATCAACCCTCACGCTATTAGGGGAGCTCTCAGTCCGTGCATATATATCACTCCAAAAATATTTGAACTATCACTTCAACAATGAGAGATATACATACGGATACTAACTGTAGTTCAAGAACGCCAAATATTCGACTAAGAAGACGCTCAAATGAGATTCCTGCGGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCAATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCAAGTGTTTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCAACTCAAGATAAACGTCTCCCTAAGTTTAAGTTTTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACAGTGACTTCAGATAAATTCTTGTATAGATTTGTGAGCAACCTGATAAAGTATCAGATGGTTATTTGCTACTTCTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGGTTTCTTTTCCCTGCATCCCTTATTGCCATGAATGATGTTGGTGCGTATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATAAAGCTTTCTCCAAAGAAAACCTGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTCACGTTTGCAAACTTCTTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGGATGCCTTGTGGATGGGACTATTTGCATCAATTATAGCACCATTTGGAGGTTTTTTTGCTAGTGGTTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGACAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCGTTTGTTGTAGGCCAAGACTATTCAGTTGAGACGTTATTGGACCAGATAATGAGGAACCTTGGTTCAGAGGAGCAGCTATCTCTCTACACAAAACTCGGGCAGATATTGCAGGAAAGGCGTTTATGACAAGTTCACTATACACTTAATAAAGCATATGATTCAATTAGTGTTATATTTGTAGATGAAGACCCTGTTGGAACAAGTGGTGGAGATTAGTGAAAAAAAAAAAAATTAGACCTCTTTTTTAGCTGTTAAGTAGAGTGTAGCGATCCTTGCTAGTGACATTCCTTCTTTTCCTTTAGGGCTTAACATTGACACTTTAAAG
>Glyma02g46441.1 sequence type=CDS gene model=Glyma02g46441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGATATACATACGGATACTAACTGTAGTTCAAGAACGCCAAATATTCGACTAAGAAGACGCTCAAATGAGATTCCTGCGGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCAATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCAAGTGTTTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCAACTCAAGATAAACGTCTCCCTAAGTTTAAGTTTTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACAGTGACTTCAGATAAATTCTTGTATAGATTTGTGAGCAACCTGATAAAGTATCAGATGGTTATTTGCTACTTCTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGGTTTCTTTTCCCTGCATCCCTTATTGCCATGAATGATGTTGGTGCGTATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATAAAGCTTTCTCCAAAGAAAACCTGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTCACGTTTGCAAACTTCTTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGGATGCCTTGTGGATGGGACTATTTGCATCAATTATAGCACCATTTGGAGGTTTTTTTGCTAGTGGTTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGACAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCGTTTGTTGTAGGCCAAGACTATTCAGTTGAGACGTTATTGGACCAGATAATGAGGAACCTTGGTTCAGAGGAGCAGCTATCTCTCTACACAAAACTCGGGCAGATATTGCAGGAAAGGCGTTTATGA >Glyma02g46441.2 sequence type=CDS gene model=Glyma02g46441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGATATACATACGGATACTAACTGTAGTTCAAGAACGCCAAATATTCGACTAAGAAGACGCTCAAATGAGATTCCTGCGGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCAATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCAAGTGTTTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCAACTCAAGATAAACGTCTCCCTAAGTTTAAGTTTTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACAGTGACTTCAGATAAATTCTTGTATAGATTTGTGAGCAACCTGATAAAGTATCAGATGGTTATTTGCTACTTCTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGCAGGGATATTCTGGTTTCTTTTCCCTGCATCCCTTATTGCCATGAATGATGTTGGTGCGTATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATAAAGCTTTCTCCAAAGAAAACCTGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTCACGTTTGCAAACTTCTTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGGATGCCTTGTGGATGGGACTATTTGCATCAATTATAGCACCATTTGGAGGTTTTTTTGCTAGTGGTTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGACAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCGTTTGTTGTAGGCCAAGACTATTCAGTTGAGACGTTATTGGACCAGATAATGAGGAACCTTGGTTCAGAGGAGCAGCTATCTCTCTACACAAAACTCGGGCAGATATTGCAGGAAAGGCGTTTATGA
>Glyma02g46441.1 sequence type=predicted peptide gene model=Glyma02g46441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRDIHTDTNCSSRTPNIRLRRRSNEIPAEISKSNGNNLLVNDKSKYKSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQIFMASELFNLLRRATQDKRLPKFKFLNWHYFFTAMLFVYGRILSQQLVNTVTSDKFLYRFVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIVVFTQSAFTVANIFAGIFWFLFPASLIAMNDVGAYFFGFYFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLATGWLQCDPDPIFKPDYIPLPGLISHWLPWKEIAVLPVQWDALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVGQDYSVETLLDQIMRNLGSEEQLSLYTKLGQILQERRL* >Glyma02g46441.2 sequence type=predicted peptide gene model=Glyma02g46441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRDIHTDTNCSSRTPNIRLRRRSNEIPAEISKSNGNNLLVNDKSKYKSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQIFMASELFNLLRRATQDKRLPKFKFLNWHYFFTAMLFVYGRILSQQLVNTVTSDKFLYRFVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIVVFTQSAFTVANIFAGIFWFLFPASLIAMNDVGAYFFGFYFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLATGWLQCDPDPIFKPDYIPLPGLISHWLPWKEIAVLPVQWDALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVGQDYSVETLLDQIMRNLGSEEQLSLYTKLGQILQERRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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