SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55220 | AT | Annotation by Michelle Graham. TAIR10: trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD LENGTH=547 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| PF00254 | PFAM | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PF05697 | PFAM | Bacterial trigger factor protein (TF) | JGI | ISS | |
| PF05698 | PFAM | Bacterial trigger factor protein (TF) C-terminus | JGI | ISS | |
| UniRef100_G7K8P7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trigger factor n=2 Tax=Medicago truncatula RepID=G7K8P7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JJE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJE0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g46430 not represented in the dataset |
Glyma02g46430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g294900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46430.1 sequence type=CDS gene model=Glyma02g46430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTCTGTACTCGAACCTTCACAAGTTTCCTTCTTTTCAATCCTTCTTTCTCTCCAAACTCTGTTTTTCTTCGTGCTAATCCCAACGCTACAACACCCTTAAAATTCAATTCCCTTAAACTCTCATCGTTTTCGCCTCATGTTCACCTCTTTCAACCCTTTCTCTCTCCTCACATTTCTTCTCCCTTCACACTCTCAGCTGCTGCTTCTGCTTCTTCTTCTTCAGTTGCAGTTGGCACTGAACAGGACCGTCTTCCAGCTGAATTGAAGGTTACTGAAACAGAGGAACCCAATTCCAGAGTTAGATTGCATGTGGAGGTGCCATCATTGGTATGTGAGGATTGTTACAAAAGGGTCATAACAGAGTTTATGAAGCAAGCAAAGATCCCTGGATTTCGCCCTGGAAAGAAAGTTCCAGAAAACATTCTTATTAGTTATGTTGGGAGTCAAAATGTTCAGAAGGCTACTATTGAATCTATATTGAGGAGGACACTCTCACATGCTATGACATCAGTTACTGGAAGGGCTTTGCAGGACTCGGTACAAATAGTGACTAAGTTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTCTCTTAGATATGATGTCCTTGTTGATATTGCACCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATAGATGCTCACAGAGCATCTGAACAAGAATTTAGAAGGCGTTATAAATCCATTGGTGCACTGAAAGTGGTTATTGACAGAGGGCTACAGGTTGGAGATGTTGCTGTCCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAGGCTTTAATTTTGATACAGAATATGGTGAACAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGTGAATCAAAGTCTTTTCCTCTTGTATTTCCTGAAACATGGAAGCAAGAAAATCTTCATGGTGTTCATGCTCAGTTTACTGTTGAATGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTGGATGATTCTATTGCTGATAAGCTTCTTCCTGAATGCACCACAGTGGAGCAGGTCAAAGACTTATTGTTACAGAAATGCCTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATTTCTAAGATTGTAGAAGTTGATATACCTAAATCCTTGTTTGAGGAACAAGGAAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAGCAGCTGGCGACTCTGTCAAGTTCGAAGGCTGTGAACGAATTTCTTGAGCATCAGAAGGAAAATATAACAAATTTAATAAAACAGAGTCTGGCAGTTGGTGATATTTATAAGCGTGAAAATCTGCAGTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGA
>Glyma02g46430.1 sequence type=predicted peptide gene model=Glyma02g46430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELCTRTFTSFLLFNPSFSPNSVFLRANPNATTPLKFNSLKLSSFSPHVHLFQPFLSPHISSPFTLSAAASASSSSVAVGTEQDRLPAELKVTETEEPNSRVRLHVEVPSLVCEDCYKRVITEFMKQAKIPGFRPGKKVPENILISYVGSQNVQKATIESILRRTLSHAMTSVTGRALQDSVQIVTKFSEMEETYSSLGSLRYDVLVDIAPEIKWIPDNNAYKNLKIVVEIDSDIDAHRASEQEFRRRYKSIGALKVVIDRGLQVGDVAVLDISATTIDQDESNVKSIPSAESKGFNFDTEYGEQVLPGFLDSIIGIQRGESKSFPLVFPETWKQENLHGVHAQFTVECKELFYRDLPELDDSIADKLLPECTTVEQVKDLLLQKCLEVEQTAREQATDNAILDQISKIVEVDIPKSLFEEQGRQLYGANLLEIQAKMKLNEQQLATLSSSKAVNEFLEHQKENITNLIKQSLAVGDIYKRENLQFATEDLVKEVENSIAEFKRQNQEYDEERVKGQVQEILEGAKVLEWLREHAEVQYITK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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