Glyma02g46390 - SoyBase

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Report for Sequence Feature Glyma02g46390

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50360454
stop:	50365436
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26780	AT	Annotation by Michelle Graham. TAIR10: Co-chaperone GrpE family protein \| chr4:13485066-13486560 REVERSE LENGTH=327	SoyBase	E_val: 1.00E-103	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0051087	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chaperone binding	SoyBase	N/A	ISS
KOG3003	KOG	Molecular chaperone of the GrpE family	JGI		ISS
PTHR21237	Panther	GRPE PROTEIN	JGI		ISS
PTHR21237:SF6	Panther	GRPE PROTEIN, MITOCHONDRIAL	JGI		ISS
PF01025	PFAM	GrpE	JGI		ISS
UniRef100_I1JJD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: GrpE protein homolog n=1 Tax=Glycine max RepID=I1JJD4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JJD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GrpE protein homolog n=1 Tax=Glycine max RepID=I1JJD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46390 not represented in the dataset	Glyma02g46390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g46390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g294600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46390

Limit To All Plant Sequences

>Glyma02g46390.2   sequence type=transcript   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGAAGCCCAGGCCCTACCTATCTCCTCTAATTGATTCCTCAGTTCTGTTCTATTTTTCGTAAACTCTTCTTCTTCTTCATCGTCCCGAGGCTCAGCGATGTTCTTTCATAGGGTTTTGTCCCGTGTCTCCACCAACATTTGCCGAACTTCGCTCCTCTCTGCTTCGCAAACACCCCAACACTTGTCCTCCTTCGCAAATATCAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGGTACTTGGAATTTCAATCTTGGTAAACAAGGTGATTCCTGTTCAACTCAATTTGTTGCTGCCACCAATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGAAAAACAGAAATAATGTGCATAATGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAAGAACTTGTGATGTTAAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTTGAAATGACAGAGAAACAATTAGTAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACCAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCCGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCCAATCGAGGATGAATAGAATAATGGAAAAGATAGCGTAGCTGATAAGGGCTCATAGGATAAAGTAATTCCTGAGTGGCTTCTATTGAGTGGGATGGGGGGACTTTCAAAATGTGAGAAATGGAATTTTGAAAGTAAATTATTACTTACCAAATATTTGTCGTCAAAGGGGGCATGAGAATATAAATGGTACAATATATTATCTGAGATTTTTCAACTTTTCATTATTTGTTTGAATTTTATACTGATAAAAAAATGTTATTTGGTGAGATTAGCATGAAATTTTGCCCCGT

>Glyma02g46390.3   sequence type=transcript   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGAGGAAGCCCAGGCCCTACCTATCTCCTCTAATTGATTCCTCAGTTCTGTTCTATTTTTCGTAAACTCTTCTTCTTCTTCATCGTCCCGAGGCTCAGCGATGTTCTTTCATAGGGTTTTGTCCCGTGTCTCCACCAACATTTGCCGAACTTCGCTCCTCTCTGCTTCGCAAACACCCCAACACTTGTCCTCCTTCGCAAATATCAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGGTGATTCCTGTTCAACTCAATTTGTTGCTGCCACCAATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGAAAAACAGAAATAATGTGCATAATGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAAGAACTTGTGATGTTAAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTTGAAATGACAGAGAAACAATTAGTAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACCAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCCGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCCAATCGAGGATGAATAGAATAATGGAAAAGATAGCGTAGCTGATAAGGGCTCATAGGATAAAGTAATTCCTGAGTGGCTTCTATTGAGTGGGATGGGGGGACTTTCAAAATGTGAGAAATGGAATTTTGAAAGTAAATTATTACTTACCAAATATTTGTCGTCAAAGGGGGCATGAGAATATAAATGGTACAATATATTATCTGAGATTTTTCAACTTTTCATTATTTGTTTGAATTTTATACTGATAAAAAAATGTTATTTGGTGAGATTAGCATGAAATTTTGCCCCGT

Coding sequences of Glyma02g46390

Limit To All Plant Sequences

>Glyma02g46390.1   sequence type=CDS   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTTCATAGGGTTTTGTCCCGTGTCTCCACCAACATTTGCCGAACTTCGCTCCTCTCTGCTTCGCAAACACCCCAACACTTGTCCTCCTTCGCAAATATCAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGGTGATTCCTGTTCAACTCAATTTGTTGCTGCCACCAATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGAAAAACAGAAATAATGTGCATAATGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGGTTCTATTTCAGATTCTCAATCTCAAACTGTCAAAAGAAGGAGGAGAGGTTTTAAACGAACTGCATTTTCTGATTCAGATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAAGAACTTGTGATGTTAAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTTGAAATGACAGAGAAACAATTAGTAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACCAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCCGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCCAATCGAGGATGA

>Glyma02g46390.2   sequence type=CDS   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTTCATAGGGTTTTGTCCCGTGTCTCCACCAACATTTGCCGAACTTCGCTCCTCTCTGCTTCGCAAACACCCCAACACTTGTCCTCCTTCGCAAATATCAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGGTACTTGGAATTTCAATCTTGGTAAACAAGGTGATTCCTGTTCAACTCAATTTGTTGCTGCCACCAATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGAAAAACAGAAATAATGTGCATAATGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAAGAACTTGTGATGTTAAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTTGAAATGACAGAGAAACAATTAGTAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACCAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCCGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCCAATCGAGGATGA

>Glyma02g46390.3   sequence type=CDS   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTTCATAGGGTTTTGTCCCGTGTCTCCACCAACATTTGCCGAACTTCGCTCCTCTCTGCTTCGCAAACACCCCAACACTTGTCCTCCTTCGCAAATATCAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGGTGATTCCTGTTCAACTCAATTTGTTGCTGCCACCAATAAATTCATTATCAGCTCCAAGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGAAAAACAGAAATAATGTGCATAATGGAGATTCTACAAATGCTGACCCTGCAAAAGCAAATGAAGAGGCAAAAAATAATGATCAGGCTAGGCAAGACAAACCTGCAGATAAAACAGAGGAATCAGATTCAGAAAGTGAATGTGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAAGAACTTGTGATGTTAAAGCACAAGGAGATTGAAAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTTGAAATGACAGAGAAACAATTAGTAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACCAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCCGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCCAATCGAGGATGA

Predicted protein sequences of Glyma02g46390

Limit To All Plant Sequences

>Glyma02g46390.1   sequence type=predicted peptide   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVIPVQLNLLLPPINSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQARQDKPADKTEESGSISDSQSQTVKRRRRGFKRTAFSDSDSESECDLSRDDLIKLVAEKEELVMLKHKEIEKMQDKVLRTYAEMENVMERTRREADNSKKFALQNFAKSLLDVADNLGRASSVATENFSKIDTSSDSAEVVKLLKTLLQGVEMTEKQLVEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTHANRG*

>Glyma02g46390.2   sequence type=predicted peptide   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVLGISILVNKVIPVQLNLLLPPINSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQARQDKPADKTEESDSESECDLSRDDLIKLVAEKEELVMLKHKEIEKMQDKVLRTYAEMENVMERTRREADNSKKFALQNFAKSLLDVADNLGRASSVATENFSKIDTSSDSAEVVKLLKTLLQGVEMTEKQLVEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTHANRG*

>Glyma02g46390.3   sequence type=predicted peptide   gene model=Glyma02g46390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVIPVQLNLLLPPINSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQARQDKPADKTEESDSESECDLSRDDLIKLVAEKEELVMLKHKEIEKMQDKVLRTYAEMENVMERTRREADNSKKFALQNFAKSLLDVADNLGRASSVATENFSKIDTSSDSAEVVKLLKTLLQGVEMTEKQLVEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTHANRG*

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