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Report for Sequence Feature Glyma02g46360

Feature Type:gene_model
Chromosome:Gm02
Start:50344708
stop:50345897
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g46360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55790AT Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF2431) | chr1:20852685-20856069 REVERSE LENGTH=515 SoyBaseE_val: 6.00E-70ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG4174 KOG Uncharacterized conserved protein JGI ISS
PTHR11538Panther PHENYLALANYL-TRNA SYNTHETASE RELATED JGI ISS
PTHR11538:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF10354PFAM Domain of unknown function (DUF2431) JGI ISS
UniRef100_I1JJD1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJD1_SOYBN SoyBaseE_val: 6.00E-158ISS
UniRef100_Q9LFZ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: F20N2.17 n=1 Tax=Arabidopsis thaliana RepID=Q9LFZ4_ARATH SoyBaseE_val: 2.00E-63ISS

Expression Patterns of Glyma02g46360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46360 not represented in the dataset
Glyma02g46360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g46360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g294300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g46360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g46360
>Glyma02g46360.2   sequence type=CDS   gene model=Glyma02g46360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAAAAAGATAAAGCACTACAGTAGCCACCATAAGATATTGCTCGTGGGAGAGGGGGATTTCTCTTTTTCACTCTCTTTGGCGAACGCATTTGGCTCTGCCTCAAACATGGTAGCAACTTCCTTGGATTCCAAAGTGACAGTAATTGGGAAGTATTCCAGGGCTTCAACAAACTTAAACGAATTGGAGAACCTTGGTTGCACCATTGTGCATGAAGTGGATGTTCATACCATGAACAAACACCCGCTGCTCCAAAGGAAATATTTTGATCGCATTGTCTTCAATTTTCCACATGCTGGATTTGTTTATCGTGAACATGATTCGTGCCAGATTGAGCTTCACAAGCACGTGGTGTTGGGGTTTTTGAAGAGTGCAAGGCAGATGGTAAGCCAAGATGGAGAAATTCACGTTACACACAAGAATGCTCACCCTTTTAATAACTGGAAAGTAGTGAAGTTGGCAGAGGAGCTGGCAAAGTTGGTATTGGTTGAGAGGGTGCCGTTTTATTTATTTGAATATCCGGGTTACATTAATAAGAGAGGATCCGGACATAGATGCGACCAAAGTTTTCCCGTTGGTGATTGTAGCACCTTCAAATTTTCAAAGGCATGTGATGTGGAATCTCTCATTTTGGAGACA
Predicted protein sequences of Glyma02g46360
>Glyma02g46360.2   sequence type=predicted peptide   gene model=Glyma02g46360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKKIKHYSSHHKILLVGEGDFSFSLSLANAFGSASNMVATSLDSKVTVIGKYSRASTNLNELENLGCTIVHEVDVHTMNKHPLLQRKYFDRIVFNFPHAGFVYREHDSCQIELHKHVVLGFLKSARQMVSQDGEIHVTHKNAHPFNNWKVVKLAEELAKLVLVERVPFYLFEYPGYINKRGSGHRCDQSFPVGDCSTFKFSKACDVESLILET






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