Glyma02g46350 - SoyBase

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Report for Sequence Feature Glyma02g46350

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50335934
stop:	50343109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20290	AT	Annotation by Michelle Graham. TAIR10: EPS15 homology domain 1 \| chr3:7075057-7078655 REVERSE LENGTH=545	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1954	KOG	Endocytosis/signaling protein EHD1	JGI		ISS
PTHR11216	Panther	EH DOMAIN	JGI		ISS
PTHR11216:SF31	Panther	EH DOMAIN CONTAINING/PAST 1, 2, 3	JGI		ISS
PF00350	PFAM	Dynamin family	JGI		ISS
UniRef100_G7K8N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EH-domain-containing protein n=2 Tax=Medicago truncatula RepID=G7K8N7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JJC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46350 not represented in the dataset	Glyma02g46350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g46350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g294200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46350

Limit To All Plant Sequences

>Glyma02g46350.2   sequence type=transcript   gene model=Glyma02g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAGTGGTGACACGAATTTCCATATTAACTTGAAGTTAAACATGGCAATCTGAATTCTGAATCAGCAAGCAAAGGTGAGTTGGAACTACGAGACAAGGCGTAATTTGTCGCATTTAGATGAAACTCACAACTTTACTTGGCACTATTTTTTGGTAAACAAGATCAATATTCGTTAAAGCAGCATTTCTGCGCCAAATCTAGTTAGTTTCCATCGCCAATACAATACGACACCGCTTAATGCAAGTCCTCGTCGTCGTTTAACGCTCACGTTTTCTGTTCTCTGAGAAGGTAAAAAGCGTTAAAACGCAGCATCTCAAACACGCGATTCCGAAGCTTTTCTGCGATCAATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAAATTTCTGAGCAATTGAGTCGGTGCTATAATTAGATTAGTTAGAGTGACATTTGTAGCGTACAAATTTTACGGGATCTTTATGCAATGTATGTGTGTCATGAGATCTTTATGTGCCATCCGGTGGCCTTTCTTTTCTAGTAGGAAGTTTTATTATTTAATATATGTTTTTGTATTTATGTATATTTTGTTATCTACAATCAAGTGTCAAGACAGAAAATAAAGGGAAAACACAATTACTTGTTTGCATCAAGTCCGTTATGTGTTTAGTGTAGCTAAAGATAATGATTAACAGTTTGGTCTAGTAGTCAAGTAAATG

Coding sequences of Glyma02g46350

Limit To All Plant Sequences

>Glyma02g46350.1   sequence type=CDS   gene model=Glyma02g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGCAATTAGCAATAATGCAGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAA

>Glyma02g46350.2   sequence type=CDS   gene model=Glyma02g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAA

Predicted protein sequences of Glyma02g46350

Limit To All Plant Sequences

>Glyma02g46350.1   sequence type=predicted peptide   gene model=Glyma02g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFDPIPIGSCSKEHQMIYKEWFNYADSDSDGRITGSDATKFFAMSNLPREDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSDVDFTNGKPPSMEGLDVLLVKKKHKQKEVDANAISNNAGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAATGPLGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEFFRERLSGYNIDKFEKLKPKMTQAVDDMLAYDIPNLLKNFRNPYD*

>Glyma02g46350.2   sequence type=predicted peptide   gene model=Glyma02g46350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFDPIPIGSCSKEHQMIYKEWFNYADSDSDGRITGSDATKFFAMSNLPREDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSDVDFTNGKPPSMEGLDVLLVKKKHKQKEVDANGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAATGPLGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEFFRERLSGYNIDKFEKLKPKMTQAVDDMLAYDIPNLLKNFRNPYD*

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