Glyma02g46290 - SoyBase

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Report for Sequence Feature Glyma02g46290

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50286664
stop:	50289971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20330	AT	Annotation by Michelle Graham. TAIR10: PYRIMIDINE B \| chr3:7090354-7091904 REVERSE LENGTH=390	SoyBase	E_val: 0	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006207	GO-bp	Annotation by Michelle Graham. GO Biological Process: 'de novo' pyrimidine nucleobase biosynthetic process	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004070	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartate carbamoyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
GO:0016743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxyl- or carbamoyltransferase activity	SoyBase	N/A	ISS
KOG1504	KOG	Ornithine carbamoyltransferase OTC/ARG3	JGI		ISS
PTHR11405	Panther	CARBAMOYLTRANSFERASE RELATED	JGI		ISS
PTHR11405:SF16	Panther	CARBAMOYLTRANSFERASE-RELATED	JGI		ISS
PF00185	PFAM	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	JGI		ISS
PF02729	PFAM	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	JGI		ISS
UniRef100_G7K8M5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartate carbamoyltransferase n=1 Tax=Medicago truncatula RepID=G7K8M5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JJC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJC4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g46290 not represented in the dataset	Glyma02g46290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46290

Paralog	Evidence	Comments
Glyma14g02430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g293500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46290

Limit To All Plant Sequences

>Glyma02g46290.2   sequence type=transcript   gene model=Glyma02g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTTTGGTCCGGATTCTTCTGCCGTCTATTCTGAAGCGTGGTTTTTAAAGCATATGCCTTTATAGTCAAGTGATTCCTCTTGTTTCTGGCATAGAATAAACCACTCCAAAAGAACACAATGAGCGCTGCTTCTTTTCTATTCTCCTGCTCTATGCATGTGGGTGTGTCTCATCCCAAAGTGGCTGCAAAATCCTCTCCATGCGGTTTGCTCAATCAGCCATGGAATCATTTAAAGTCAAAAACACCATTTGGGCATTCAGGAGTTTTGGAAAAATCTAAACTTTCACAAAAAGGTGATGAGATTCTGTGGAGGGCAGGGGCCCTTCAAGTGGAAAGTGCACCCTCATTCTCCATGGGGCAAAAATTTCACCTTCACGATGTGATTGAGGCTCAGCAATTTGACAGAGAGACTCTCAATGCCATATTTGAAGTTGCAAGGAGCATGGAGAGCATTGAAAGCAAGTCATCTAGGAGCCAAATGCTAAAGGGTTACCTCATGGCTACTTTGTTTTATGAGCCATCCACTAGAACTAGGCTTTCATTTGAGTCTGCCATGAAAAGATTGGGTGGGGATGTTCTCACAACTGAGAATGCAAGGGAGTTTTCATCTGCTGCTAAAGGAGAGACGCTTGAAGATACAATAAGAACGGTTGAAGGTTACTCTGATATAATTGTGATGAGGCACTTTGAAAGTGGTGCTGCCAAAAGAGCAGCAACAACTGCTAGCATTCCTGTAATCAATGCAGGGGATGGCCCTGGACAGCATCCCTCACAGGCACTGCTAGATGTTTATACCATTGAAAGAGAGATAGGGAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTTGCTAATGGGAGAACAGTTCGCTCACTTGCATACTTACTAGCCAAGTATCAGGACGTGAAAATTTATTTTGTCTCTCCTAACGTGGTTAAAATGAAGGATGACATAAAAGACTATCTGACATCAAAGGGAGTGGAGTGGGAAGAAAGTGCTGATTTGATGGAAGTGGCTTCTAAGTGCAATGTGGTTTATCAAACTCGCATTCAGAAAGAAAGATTTGGAGAGAAAATTGAACTTTATGAGGAGGCAAGAGGCAAGTATATTGTAAATCAAGATGTTTTAAATGTGATGCAAAAACATGCCGTGGTTATGCACCCTCTTCCAAGACTTGATGAGATTACGGTGGATGTTGATAGTGATCCAAGAGCTGCTTACTTTCGGCAGGCAAAGAATGGTCTATATATTAGGATGGCTCTCTTAAAGGTATTGCTTCTTGGTTGGTAAGGATGCATTCACTTTTCAAAGTGAATGGGATGATCTAATGTCAAAAAAATTTAGTTGTTTTCTTTGTTTCCTTTCCTTGCATTTTAGCATGTATCTACTGTGTGTCCAAATGCAGTTTTTCTATTTGTAGGCGTCACAAATACAGTGAGAGAGGGAGAAATAAAATTTTCTTTTTGAGTAAAATTTCCTTGAAATGCAAGTTTTTTCCACCTCAGTGCAAGC

Coding sequences of Glyma02g46290

Limit To All Plant Sequences

>Glyma02g46290.1   sequence type=CDS   gene model=Glyma02g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCTGCTTCTTTTCTATTCTCCTGCTCTATGCATGTGGGTGTGTCTCATCCCAAAGTGGCTGCAAAATCCTCTCCATGCGGTTTGCTCAATCAGCCATGGAATCATTTAAAGTCAAAAACACCATTTGGGCATTCAGGAGTTTTGGAAAAATCTAAACTTTCACAAAAAGGTGATGAGATTCTGTGGAGGGCAGGGGCCCTTCAAGTGGAAAGTGCACCCTCATTCTCCATGGGGCAAAAATTTCACCTTCACGATGTGATTGAGGCTCAGCAATTTGACAGAGAGACTCTCAATGCCATATTTGAAGTTGCAAGGAGCATGGAGAGCATTGAAAGCAAGTCATCTAGGAGCCAAATGCTAAAGGGTTACCTCATGGCTACTTTGTTTTATGAGCCATCCACTAGAACTAGGCTTTCATTTGAGTCTGCCATGAAAAGATTGGGTGGGGATGTTCTCACAACTGAGAATGCAAGGGAGTTTTCATCTGCTGCTAAAGGAGAGACGCTTGAAGATACAATAAGAACGGTTGAAGGTTACTCTGATATAATTGTGATGAGGCACTTTGAAAGTGGTGCTGCCAAAAGAGCAGCAACAACTGCTAGCATTCCTGTAATCAATGCAGGGGATGGCCCTGGACAGCATCCCTCACAGGCACTGCTAGATGTTTATACCATTGAAAGAGAGATAGGGAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTTGCTAATGGGAGAACAGTTCGCTCACTTGCATACTTACTAGCCAAGTATCAGGACGTGAAAATTTATTTTGTCTCTCCTAACGTGGTTAAAATGAAGGATGACATAAAAGACTATCTGACATCAAAGGGAGTGGAGTGGGAAGAAAGTGCTGATTTGATGGAAGTGGCTTCTAAGTGCAATGTGGTTTATCAAACTCGCATTCAGAAAGAAAGATTTGGAGAGAAAATTGAACTTTATGAGGAGGCAAGAGGCAAGTATATTGTAAATCAAGATGTTTTAAATGTGATGCAAAAACATGCCGTGGTTATGCACCCTCTTCCAAGACTTGATGAGATTACGGTGGATGTTGATAGTGATCCAAGAGCTGCTTACTTTCGGCAGGCAAAGAATGGTCTATATATTAGGATGGCTCTCTTAAAGGTATTGCTTCTTGGTTGGTAA

>Glyma02g46290.2   sequence type=CDS   gene model=Glyma02g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCTGCTTCTTTTCTATTCTCCTGCTCTATGCATGTGGGTGTGTCTCATCCCAAAGTGGCTGCAAAATCCTCTCCATGCGGTTTGCTCAATCAGCCATGGAATCATTTAAAGTCAAAAACACCATTTGGGCATTCAGGAGTTTTGGAAAAATCTAAACTTTCACAAAAAGGTGATGAGATTCTGTGGAGGGCAGGGGCCCTTCAAGTGGAAAGTGCACCCTCATTCTCCATGGGGCAAAAATTTCACCTTCACGATGTGATTGAGGCTCAGCAATTTGACAGAGAGACTCTCAATGCCATATTTGAAGTTGCAAGGAGCATGGAGAGCATTGAAAGCAAGTCATCTAGGAGCCAAATGCTAAAGGGTTACCTCATGGCTACTTTGTTTTATGAGCCATCCACTAGAACTAGGCTTTCATTTGAGTCTGCCATGAAAAGATTGGGTGGGGATGTTCTCACAACTGAGAATGCAAGGGAGTTTTCATCTGCTGCTAAAGGAGAGACGCTTGAAGATACAATAAGAACGGTTGAAGGTTACTCTGATATAATTGTGATGAGGCACTTTGAAAGTGGTGCTGCCAAAAGAGCAGCAACAACTGCTAGCATTCCTGTAATCAATGCAGGGGATGGCCCTGGACAGCATCCCTCACAGGCACTGCTAGATGTTTATACCATTGAAAGAGAGATAGGGAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTTGCTAATGGGAGAACAGTTCGCTCACTTGCATACTTACTAGCCAAGTATCAGGACGTGAAAATTTATTTTGTCTCTCCTAACGTGGTTAAAATGAAGGATGACATAAAAGACTATCTGACATCAAAGGGAGTGGAGTGGGAAGAAAGTGCTGATTTGATGGAAGTGGCTTCTAAGTGCAATGTGGTTTATCAAACTCGCATTCAGAAAGAAAGATTTGGAGAGAAAATTGAACTTTATGAGGAGGCAAGAGGCAAGTATATTGTAAATCAAGATGTTTTAAATGTGATGCAAAAACATGCCGTGGTTATGCACCCTCTTCCAAGACTTGATGAGATTACGGTGGATGTTGATAGTGATCCAAGAGCTGCTTACTTTCGGCAGGCAAAGAATGGTCTATATATTAGGATGGCTCTCTTAAAGGTATTGCTTCTTGGTTGGTAA

Predicted protein sequences of Glyma02g46290

Limit To All Plant Sequences

>Glyma02g46290.1   sequence type=predicted peptide   gene model=Glyma02g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAASFLFSCSMHVGVSHPKVAAKSSPCGLLNQPWNHLKSKTPFGHSGVLEKSKLSQKGDEILWRAGALQVESAPSFSMGQKFHLHDVIEAQQFDRETLNAIFEVARSMESIESKSSRSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKRAATTASIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPNVVKMKDDIKDYLTSKGVEWEESADLMEVASKCNVVYQTRIQKERFGEKIELYEEARGKYIVNQDVLNVMQKHAVVMHPLPRLDEITVDVDSDPRAAYFRQAKNGLYIRMALLKVLLLGW*

>Glyma02g46290.2   sequence type=predicted peptide   gene model=Glyma02g46290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAASFLFSCSMHVGVSHPKVAAKSSPCGLLNQPWNHLKSKTPFGHSGVLEKSKLSQKGDEILWRAGALQVESAPSFSMGQKFHLHDVIEAQQFDRETLNAIFEVARSMESIESKSSRSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKRAATTASIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPNVVKMKDDIKDYLTSKGVEWEESADLMEVASKCNVVYQTRIQKERFGEKIELYEEARGKYIVNQDVLNVMQKHAVVMHPLPRLDEITVDVDSDPRAAYFRQAKNGLYIRMALLKVLLLGW*

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