Glyma02g46280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g46280

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50283764
stop:	50286048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62300	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr1:23016887-23019155 REVERSE LENGTH=553	SoyBase	E_val: 1.00E-75	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0080169	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance deprivation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0044212	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9RXH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	SoyBase	E_val: 1.00E-79	ISS
UniRef100_I1JJC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JJC3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g46280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g293400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46280

Limit To All Plant Sequences

>Glyma02g46280.2   sequence type=transcript   gene model=Glyma02g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTTAGAGGGACACCGCTTGTCATGGATGAGCTTGATTTCTTTGCTCAGAAGAGAAAAGTGAGTGCAAATGATGATGATCATCAAAGAGTGGAAGACCTTCATGTTGATACTAGCTTAGATCTTCTTACGAAGAATGATACCGATGTCAATAATAGATCAACGGAGGAAGATGCGGCATTGGAAACTATGGATGATAAGAGCAACGAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAGTGCAATATAATAATGCATAAGGCTTCTGTTATTGGTGTCATTTCCTTAATTTTGCAAATTTATTTTGTTTTGATCGTTTTCATATTCAAGATAGGTATAGAGATTTTTGTTCTTACGAATTTGTTTGGCACAAAGACGTTCACCATTATTTTCCACGCATGGGTTTGTATTTTTTTTTTAATTTTGATTTAATTA

Coding sequences of Glyma02g46280

Limit To All Plant Sequences

>Glyma02g46280.1   sequence type=CDS   gene model=Glyma02g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTGAGAATCAACGCTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAG

>Glyma02g46280.2   sequence type=CDS   gene model=Glyma02g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTTAGAGGGACACCGCTTGTCATGGATGAGCTTGATTTCTTTGCTCAGAAGAGAAAAGTGAGTGCAAATGATGATGATCATCAAAGAGTGGAAGACCTTCATGTTGATACTAGCTTAGATCTTCTTACGAAGAATGATACCGATGTCAATAATAGATCAACGGAGGAAGATGCGGCATTGGAAACTATGGATGATAAGAGCAACGAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAG

Predicted protein sequences of Glyma02g46280

Limit To All Plant Sequences

>Glyma02g46280.1   sequence type=predicted peptide   gene model=Glyma02g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAENQRLRELVDQVNNNCNTLRMQLVKLTQKHHSHGNNGVIGEKEDMVPRSFLDIGVAEKDEPNSQQSSEGKLRESKSMVELGHGKDIAVLEAYKLDSTAGRESTKARMEGRQISTEQEFSNKVPRLDPASETMSMIKKARVSVRAKSYSSMIADGCQWRKYGQKMAKGNPWPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTTSVAASMPSILESASLPCSRNMATLSASAPFPTITLDLTQNATNSSQLQRELPLGQLGLLSPLLAHKFMSVPKIFGQGMDTNSSFANILNAATADPNFTAALVAAITSVMGTSHSNTNATNSTSGDE*

>Glyma02g46280.2   sequence type=predicted peptide   gene model=Glyma02g46280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFRGTPLVMDELDFFAQKRKVSANDDDHQRVEDLHVDTSLDLLTKNDTDVNNRSTEEDAALETMDDKSNEVNNNCNTLRMQLVKLTQKHHSHGNNGVIGEKEDMVPRSFLDIGVAEKDEPNSQQSSEGKLRESKSMVELGHGKDIAVLEAYKLDSTAGRESTKARMEGRQISTEQEFSNKVPRLDPASETMSMIKKARVSVRAKSYSSMIADGCQWRKYGQKMAKGNPWPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTTSVAASMPSILESASLPCSRNMATLSASAPFPTITLDLTQNATNSSQLQRELPLGQLGLLSPLLAHKFMSVPKIFGQGMDTNSSFANILNAATADPNFTAALVAAITSVMGTSHSNTNATNSTSGDE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain