SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62300 | AT | Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr1:23016887-23019155 REVERSE LENGTH=553 | SoyBase | E_val: 1.00E-75 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0080169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance deprivation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0044212 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding | SoyBase | N/A | ISS |
| PF03106 | PFAM | WRKY DNA -binding domain | JGI | ISS | |
| UniRef100_B9RXH5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO | SoyBase | E_val: 1.00E-79 | ISS |
| UniRef100_I1JJC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JJC3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g46280 not represented in the dataset |
Glyma02g46280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g293400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46280.2 sequence type=transcript gene model=Glyma02g46280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTTAGAGGGACACCGCTTGTCATGGATGAGCTTGATTTCTTTGCTCAGAAGAGAAAAGTGAGTGCAAATGATGATGATCATCAAAGAGTGGAAGACCTTCATGTTGATACTAGCTTAGATCTTCTTACGAAGAATGATACCGATGTCAATAATAGATCAACGGAGGAAGATGCGGCATTGGAAACTATGGATGATAAGAGCAACGAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAGTGCAATATAATAATGCATAAGGCTTCTGTTATTGGTGTCATTTCCTTAATTTTGCAAATTTATTTTGTTTTGATCGTTTTCATATTCAAGATAGGTATAGAGATTTTTGTTCTTACGAATTTGTTTGGCACAAAGACGTTCACCATTATTTTCCACGCATGGGTTTGTATTTTTTTTTTAATTTTGATTTAATTA
>Glyma02g46280.1 sequence type=CDS gene model=Glyma02g46280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGCTGAGAATCAACGCTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAG >Glyma02g46280.2 sequence type=CDS gene model=Glyma02g46280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTTAGAGGGACACCGCTTGTCATGGATGAGCTTGATTTCTTTGCTCAGAAGAGAAAAGTGAGTGCAAATGATGATGATCATCAAAGAGTGGAAGACCTTCATGTTGATACTAGCTTAGATCTTCTTACGAAGAATGATACCGATGTCAATAATAGATCAACGGAGGAAGATGCGGCATTGGAAACTATGGATGATAAGAGCAACGAGGTGAACAATAACTGCAACACCCTACGCATGCAACTTGTCAAGCTAACACAGAAGCATCATAGCCATGGGAATAACGGAGTGATAGGGGAAAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATTGGTGTTGCTGAGAAGGATGAGCCTAATTCCCAGCAATCTTCTGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGAGTTAGGACATGGCAAAGATATTGCTGTTTTGGAGGCATATAAGTTGGATTCTACTGCTGGAAGGGAAAGTACAAAAGCTAGAATGGAAGGGAGGCAGATAAGTACTGAACAAGAATTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAAATCATATTCTTCAATGATTGCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGGTACAAAGGTGTGCTGAAGACAGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAACATCTGTAGCTGCCTCAATGCCAAGCATATTAGAAAGTGCTTCACTTCCATGCTCTCGGAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACATTGGACCTCACTCAAAATGCAACCAATTCCTCACAGCTACAAAGGGAATTACCACTGGGCCAACTTGGCCTCCTATCCCCACTTTTGGCTCATAAGTTCATGTCAGTCCCTAAAATATTTGGACAGGGAATGGACACAAATTCATCGTTTGCTAACATATTAAATGCAGCCACTGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCTATAACATCTGTCATGGGAACTTCACATTCAAACACCAATGCCACCAATAGTACAAGTGGAGATGAGTAG
>Glyma02g46280.1 sequence type=predicted peptide gene model=Glyma02g46280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNAENQRLRELVDQVNNNCNTLRMQLVKLTQKHHSHGNNGVIGEKEDMVPRSFLDIGVAEKDEPNSQQSSEGKLRESKSMVELGHGKDIAVLEAYKLDSTAGRESTKARMEGRQISTEQEFSNKVPRLDPASETMSMIKKARVSVRAKSYSSMIADGCQWRKYGQKMAKGNPWPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTTSVAASMPSILESASLPCSRNMATLSASAPFPTITLDLTQNATNSSQLQRELPLGQLGLLSPLLAHKFMSVPKIFGQGMDTNSSFANILNAATADPNFTAALVAAITSVMGTSHSNTNATNSTSGDE* >Glyma02g46280.2 sequence type=predicted peptide gene model=Glyma02g46280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFRGTPLVMDELDFFAQKRKVSANDDDHQRVEDLHVDTSLDLLTKNDTDVNNRSTEEDAALETMDDKSNEVNNNCNTLRMQLVKLTQKHHSHGNNGVIGEKEDMVPRSFLDIGVAEKDEPNSQQSSEGKLRESKSMVELGHGKDIAVLEAYKLDSTAGRESTKARMEGRQISTEQEFSNKVPRLDPASETMSMIKKARVSVRAKSYSSMIADGCQWRKYGQKMAKGNPWPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTTSVAASMPSILESASLPCSRNMATLSASAPFPTITLDLTQNATNSSQLQRELPLGQLGLLSPLLAHKFMSVPKIFGQGMDTNSSFANILNAATADPNFTAALVAAITSVMGTSHSNTNATNSTSGDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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