SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72050 | AT | Annotation by Michelle Graham. TAIR10: transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412 | SoyBase | E_val: 9.00E-139 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008097 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5S rRNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0080084 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5S rDNA binding | SoyBase | N/A | ISS |
| PTHR11389 | Panther | ZINC FINGER PROTEIN | JGI | ISS | |
| UniRef100_G7IYR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7IYR4_MEDTR | SoyBase | E_val: 7.00E-176 | ISS |
| UniRef100_I1JJC2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJC2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g46270 not represented in the dataset |
Glyma02g46270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g293300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46270.1 sequence type=CDS gene model=Glyma02g46270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCGAAGCCGTAGAAATTGAAGAAAGGCCCAAATACAAAGATATCAGACGCTATTACTGCGAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTTATCACCTCCCACATCAATTTGCACCACAAGGAAGAGTATGAAAAAGCAAGAGCTGAAAGAGATCCCGAAGCAGAGGCTTCGAAATCGAACAGTTGCGAGGAATGTGGTGCCACTTTCAAAAAACACGCCTATTTGTTGCAGCACATGCAAAGTCATTCACTTGAGAGGCCATTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCACCTGACTCGGCACCTTCTACAGCATGAAGGGAAGATTTTTAAGTGCCCTGTTGAGAATTGCAACAGTGAGTTCTCTTTGCAAAGCAATATGAAAAGACATACTGAGGAGATTCATGATGACAGTTCTACCACTACCAGTAGTGACAAAAGTCACAAACAGCATATGTGTCCAGAGATTGGCTGTGGAAAGGTTTTTAGATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAATTTGGAATCAGTAGATATGGTGTGCTTAGAGCCTGGTTGCTTGAAACATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTGAAGTCCTCCCATCAGTATATGACCTGTGACATTTGCGGGACAAAGCAACTGAAGAAGAATATTAAGCGCCATCTTCGATCACATGAAGCTGAAGGCAGTTCATCAGAGACCTTTCAATGCGAGTTTAAGGGTTGCAGCTGCACATTCTCAAGAAAATCTAATCTAGACAAGCATAAGAAGGCTGTGCACTTTAATGTAAAGCCTTTTGCGTGTGGGTTTACTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCATGAAAAAACTGCTAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAGTTCAGGTCAAGGCCGAGGGGAGGAAGGAAGAGAACATGTCCCACTGTTGAAATGTTAATTAGGAAGAGGGTTACCCCACCTAGTCAATTGGAACATTGGTTATTTATGCAGGATAGTGAGTAG
>Glyma02g46270.1 sequence type=predicted peptide gene model=Glyma02g46270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCEAVEIEERPKYKDIRRYYCEYCGICRSKKTLITSHINLHHKEEYEKARAERDPEAEASKSNSCEECGATFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTRHLLQHEGKIFKCPVENCNSEFSLQSNMKRHTEEIHDDSSTTTSSDKSHKQHMCPEIGCGKVFRYASQLQKHEDSHVNLESVDMVCLEPGCLKHFTNVQCLQAHVKSSHQYMTCDICGTKQLKKNIKRHLRSHEAEGSSSETFQCEFKGCSCTFSRKSNLDKHKKAVHFNVKPFACGFTDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADEEFRSRPRGGRKRTCPTVEMLIRKRVTPPSQLEHWLFMQDSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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