SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26850 | AT | Annotation by Michelle Graham. TAIR10: mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | chr4:13499262-13501145 REVERSE LENGTH=442 | SoyBase | E_val: 0 | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0019853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0052544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008928 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannose-1-phosphate guanylyltransferase (GDP) activity | SoyBase | N/A | ISS |
| GO:0010471 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-galactose:mannose-1-phosphate guanylyltransferase activity | SoyBase | N/A | ISS |
| GO:0010472 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-galactose:glucose-1-phosphate guanylyltransferase activity | SoyBase | N/A | ISS |
| GO:0010473 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity | SoyBase | N/A | ISS |
| GO:0010474 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate guanylyltransferase (GDP) activity | SoyBase | N/A | ISS |
| GO:0010475 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactose-1-phosphate guanylyltransferase (GDP) activity | SoyBase | N/A | ISS |
| GO:0080046 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quercetin 4'-O-glucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0080048 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GDP-D-glucose phosphorylase activity | SoyBase | N/A | ISS |
| KOG2720 | KOG | Predicted hydrolase (HIT family) | JGI | ISS | |
| PTHR20884 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR20884:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_G3E7M6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GDP-L-galactose phosphorylase n=1 Tax=Glycine max RepID=G3E7M6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JJB8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJB8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g46230 not represented in the dataset |
Glyma02g46230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g292800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46230.1 sequence type=CDS gene model=Glyma02g46230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCTCAAAATCAAGAGGGTTCCCACTGTCGTTTCCAACTTCCAAAAAGACGACGCTGCAGACTCTCCTCGTCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATTTGGCCCTGCATGCATGCGCCGGGGAGCCTCCCCTCGCATTCCTCGACTCTCTTCTTCTTGGAGAGTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTGAAACCAAGGTGATTCCTGGTGAATATGGTTTCGTTGCCCAGCTTAACGAGGGTCGTCACCTCAAGAAGAGGCCAACTGAGTTCCGAGTTGATAAGGTCCTTCAACCCTTTGATGAAAACAAATTCAACTTTACCAAAGTCGGGCAAGAAGAGGTCCTCTTCCAATTTGAAGCTAGCGAGGATGGACAAGTCCAGTTCTTTCCAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGATGGCAGTGGAAGCCGATAATCCTTATTTTCGATTGGGTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAATTGCAAGTGTAAATGGTGGGGTGAAGATATCTGAACTGTTGAAGTATCCGGTTAGAGGCTTTGTCTTTGAGGGCGGCGAAATGCTGGAAGATCTATCAAACGTTGTTTCAGATGCATGTATATGTCTTCAGAACAACAACATACCTTTCAATGTTCTTATCTCTGACTGTGGAAAGCAAGTGTATCTGTTACCACAGTGTTATGCAGAGAAACAAGCTCTTGGAGAAGTGAATGCTGAGCTTCTTGACACCCAAGTGAATCCTGCTGTGTGGGAAATTAGTGGACACATGGTTTTAAAGAGGAGGAAGGATTATGATGAGGCGTCTGAAGGCAATGCTTGGAGGCTTCTTGCTGAGGTGTCCCTTTCTCAAGAGAGGTTTCAAGAAGTCAATGATCTTGTTTTTGAAGCCATTGGCTGTGGTGAATTGGAGGATGTCAATGTTCAAAGTGTCAAAAAAGAAGTTGATGCAGTCAGCACAAGCGAACACCCTACTGTGGTGGTGGTGGCTGGTTCACAAGAATGTGTGGTTCTACAGTAA
>Glyma02g46230.1 sequence type=predicted peptide gene model=Glyma02g46230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLKIKRVPTVVSNFQKDDAADSPRPVGGCGRNCLKACCIPDAKLPLYGFKKANIGKDLALHACAGEPPLAFLDSLLLGEWEDRMQRGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDENKFNFTKVGQEEVLFQFEASEDGQVQFFPNAPVDVDNSPSFVAINVSPIEYGHVLLIPRIFECLPQRIDRESFLLALQMAVEADNPYFRLGYNSLGAFATINHLHFQAYYLALPFPIEKAPTKRIASVNGGVKISELLKYPVRGFVFEGGEMLEDLSNVVSDACICLQNNNIPFNVLISDCGKQVYLLPQCYAEKQALGEVNAELLDTQVNPAVWEISGHMVLKRRKDYDEASEGNAWRLLAEVSLSQERFQEVNDLVFEAIGCGELEDVNVQSVKKEVDAVSTSEHPTVVVVAGSQECVVLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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