Glyma02g46180 - SoyBase

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Report for Sequence Feature Glyma02g46180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50205227
stop:	50217523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20475	AT	Annotation by Michelle Graham. TAIR10: MUTS-homologue 5 \| chr3:7143546-7150811 FORWARD LENGTH=807	SoyBase	E_val: 0	ISS
GO:0000710	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair	SoyBase	N/A	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006298	GO-bp	Annotation by Michelle Graham. GO Biological Process: mismatch repair	SoyBase	N/A	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0045143	GO-bp	Annotation by Michelle Graham. GO Biological Process: homologous chromosome segregation	SoyBase	N/A	ISS
GO:0051026	GO-bp	Annotation by Michelle Graham. GO Biological Process: chiasma assembly	SoyBase	N/A	ISS
GO:0000794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome	SoyBase	N/A	ISS
GO:0000795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: synaptonemal complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0032300	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mismatch repair complex	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
GO:0030983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mismatched DNA binding	SoyBase	N/A	ISS
KOG0221	KOG	Mismatch repair ATPase MSH5 (MutS family)	JGI		ISS
PTHR11361	Panther	DNA MISMATCH REPAIR MUTS RELATED PROTEINS	JGI		ISS
PTHR11361:SF17	Panther	DNA MISMATCH REPAIR PROTEIN MSH4	JGI		ISS
PF00488	PFAM	MutS domain V	JGI		ISS
PF05190	PFAM	MutS family domain IV	JGI		ISS
PF05192	PFAM	MutS domain III	JGI		ISS
UniRef100_F4JEP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein MSH5 n=1 Tax=Arabidopsis thaliana RepID=MSH5_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1JJB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JJB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g46180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46180

Paralog	Evidence	Comments
Glyma14g02561	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g292200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g46180

Limit To All Plant Sequences

>Glyma02g46180.1   sequence type=CDS   gene model=Glyma02g46180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCATCCTAAACGGTAATAGAATAGGAGTTTCTTATTATGATTCCACCCTTCGCCAACTTTATGTACTTGAAATTTGGGATGATGGTGACAAAGGCTTTCCAGTTATTGATCTGGTGAAATATCAAGCAAACCCTTTGGTTATTTACACAAGCACTAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACAAAGTGATGGAGTAGCTGAGTCACCTACAGTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCCTGGCACAGTTTACCTGGGGTGGCAGGGATGGATGATGGATTAAATGTGAAGGAGAGGATTTACTATTTGAGTTCCATGATGGACTTGGGAAGTGAAGTACAAGTTCGCGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTCTCAAACTTGATACAACAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCAGTATTTGGAATGATGAATAAGTGCGTGACTCCAATGGGTAGACGTCTTTTGAGAAATTGGTTCTTAAGGCCTATACTTGATCTTGAAGTTCTAAACTACCGTTTAAATTCTATATCTTTTTTTCTATGCTCAGAAGAACTTGTTGCTTCTTTACGAGAAACCTTGAAATCTGTGAAGGACATCCCCCACTTGCTGAATAAATTTGACTCTCCAAGTTCTATATGCACTAGCTCTGATTGGACATCTCTCCTGAAGAGTATTTGTGCCCTGTTGCATGTAAACGAGATTTTTGAAGTCGGAATTTCCGAAGGTCTTCGAGAAGAATTGAAGTATTTAAACTTGGATATTGTTGAGAAGGCAAGTTCATACATAACAGCAGAACTTGGCTATGTCTATGAACTGGTAATTGGTGTTATAGATGTAAATAGAACTAAAGAGAAGGGATATGCGACAGTGGTAAAAGAAGGTTTCTGTGATGAGTTAGATGAGCTGAGGCAAATATACGAGGAACTGCCAGAATTTCTGGAAGAGGTTTCATCATTGGAATTAGCACAACTTCCCGTTCTATGCAAGGACAAGCGCATTCCTTGTATTGTTTATATACAGCAAATAGGATATTTAATGTGTATCTTTGAAGAAAAACCCGAAGAAACCACTCTGGAGCAACTTGTAGATTGGGAATACACATTTTGTGATACAGATGGAGAGACAAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGACAGTCTGCTGGGAGATATCCACCACAAAATTCTAGATATGGAGAGGGCGATCGCCAGAGACTTGTTTTCACGTATACTGTTGTTCCGAACCCATTTGATAAAGGTGGCAACTTTTGCAGCTGAACTGGACTGCTTTTTGTCAATGGCATTGGTTGCACGGCAGCACAATTATGTCAGGCCTTCATTGACTGAAGAAAATTTGCTTGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACTGTAGACACATTTATTCCTAATGACACTAGGATTCTTCATGATGGAAGAATTAATATCATCACTGGTCCTAATTTTTCTGGAAAAAGTATCTATATAAAGCAGGTTGCTATAATTGTTTTTCTCTCCCACATTGGCAGTTTTGTGCCAGCTGATTCTGCAACTGTGGGTCTGACAGATAGAATATTTTGTGCAACAGGAAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCTACTTCGCGTTCTCTGTGTCTGGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGATGGAATTGGTCTACTTGCTGGGACCATAAATCACTTTGTCACAACTGATGAACCTCCAAAGGTTTTTGTGTGCACTCATCTCATGGATTTATTGCATGGGCATTCCTTGACCAAGTCTGAGCAGATTAAGTTTTACACAATGAGTATGCTGAGGCCTGACGAAAATTCCACACATATTGAAGACATTGTATTTTTATACAGAATAAGCTGTACGGTTCATGCAGGTGTACCAGAGGAAATCATAAAAAGAGCAGCAGCTGTGTTGGATGCCATTTCAAATAATAACCATGTTGAGCGGTTATGCAATGAGAACGTCTCTGCTCAAGATCGTCAATACAAGGATGCCATGGAGAAATTGTTGGAATTTGATATTGACAAAGGCGACTTAAAACTTTTCTTTGAGGATGTATTTTCTCTAGTTCTTAATGCTTCGTGA

Predicted protein sequences of Glyma02g46180

Limit To All Plant Sequences

>Glyma02g46180.1   sequence type=predicted peptide   gene model=Glyma02g46180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACILNGNRIGVSYYDSTLRQLYVLEIWDDGDKGFPVIDLVKYQANPLVIYTSTKSEESFLSALQQSDGVAESPTVKLVKSSIFSYEQAWHSLPGVAGMDDGLNVKERIYYLSSMMDLGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFLKLDTTAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVASLRETLKSVKDIPHLLNKFDSPSSICTSSDWTSLLKSICALLHVNEIFEVGISEGLREELKYLNLDIVEKASSYITAELGYVYELVIGVIDVNRTKEKGYATVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPVLCKDKRIPCIVYIQQIGYLMCIFEEKPEETTLEQLVDWEYTFCDTDGETKRYFYRTPKTRELDSLLGDIHHKILDMERAIARDLFSRILLFRTHLIKVATFAAELDCFLSMALVARQHNYVRPSLTEENLLDIKNGRHVLQEMTVDTFIPNDTRILHDGRINIITGPNFSGKSIYIKQVAIIVFLSHIGSFVPADSATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVTTDEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSMLRPDENSTHIEDIVFLYRISCTVHAGVPEEIIKRAAAVLDAISNNNHVERLCNENVSAQDRQYKDAMEKLLEFDIDKGDLKLFFEDVFSLVLNAS*

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