Glyma02g46150 - SoyBase

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Report for Sequence Feature Glyma02g46150

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50196522
stop:	50198847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32605	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial glycoprotein family protein \| chr4:15726429-15727864 REVERSE LENGTH=227	SoyBase	E_val: 1.00E-80	ISS
PTHR10826	Panther	COMPLEMENT COMPONENT 1	JGI		ISS
PTHR10826:SF1	Panther	COMPLEMENT COMPONENT 1, Q SUBCOMPONENT BINDING PROTEIN RELATED	JGI		ISS
PF02330	PFAM	Mitochondrial glycoprotein	JGI		ISS
UniRef100_C6T4F0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4F0_SOYBN	SoyBase	E_val: 4.00E-157	ISS
UniRef100_G7K3J2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial acidic protein MAM33 n=1 Tax=Medicago truncatula RepID=G7K3J2_MEDTR	SoyBase	E_val: 4.00E-117	ISS

Expression Patterns of Glyma02g46150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46150

Paralog	Evidence	Comments
Glyma14g02610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g291900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g46150

Limit To All Plant Sequences

>Glyma02g46150.1   sequence type=CDS   gene model=Glyma02g46150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAGGCTTGGTCGGCGCCGTGGGTGGTCTCCGGCGGCCATATTCGTCAGGAGGTGGCGGCATCTCCTCCTCCGTGAACTCAATGCTCCTCCGCTCCCTAAAGGATCACTATCAAGAAGTCGCCAAAATGAACATGCCCCCTAAAGTGAGTGCTCCATCGCCGTTCACGATCGTGAAGGGAGCTCTGGACTCGCACGGTCCGGTTCTGAAGCGCAGCTACGGCAACGAAGAGGTGAGCATCTACGTGATGCGGTTGTTGACCCCCGAGGACGAGGATTCCGCCATCGACCAGCTCTTCATCCACGTCGATGTCTCCAAACCTCAGCAGAACGAATCCTTGATTTTCCTCTGCGGTTTGTACGAGGATGCTCTTGGGATTCACTCTGTTTCCATGAGGCCTAAGGTCCAGGACTCCGGCTACCTCCTCATCCCCTCCCAATACACCGGCCCTGTTTTCGCGGAACTAGATGAAAAGATGAGAGATGCGTTTCACAGTTACATTGAGGAACGAGGAGTGAACGAGAGCCTCTTTAAATTTCTTCAAGCGTGGCTATATGTGAAGGAACATCGAAATCTGATGCGGTGGTTCAAAACCATGGGCTTGTTCGTTGATGGAAAGAAGCCAGTTACAGGTGCTTAA

Predicted protein sequences of Glyma02g46150

Limit To All Plant Sequences

>Glyma02g46150.1   sequence type=predicted peptide   gene model=Glyma02g46150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRGLVGAVGGLRRPYSSGGGGISSSVNSMLLRSLKDHYQEVAKMNMPPKVSAPSPFTIVKGALDSHGPVLKRSYGNEEVSIYVMRLLTPEDEDSAIDQLFIHVDVSKPQQNESLIFLCGLYEDALGIHSVSMRPKVQDSGYLLIPSQYTGPVFAELDEKMRDAFHSYIEERGVNESLFKFLQAWLYVKEHRNLMRWFKTMGLFVDGKKPVTGA*

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