Glyma02g46100 - SoyBase

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Report for Sequence Feature Glyma02g46100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50163763
stop:	50164917
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g46100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54940	AT	Annotation by Michelle Graham. TAIR10: Translation initiation factor SUI1 family protein \| chr5:22308420-22308758 REVERSE LENGTH=112	SoyBase	E_val: 3.00E-60	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG1770	KOG	Translation initiation factor 1 (eIF-1/SUI1)	JGI		ISS
PTHR10388	Panther	TRANSLATION FACTOR SUI1	JGI		ISS
PF01253	PFAM	Translation initiation factor SUI1	JGI		ISS
UniRef100_G7K3H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation factor SUI1-like protein n=1 Tax=Medicago truncatula RepID=G7K3H5_MEDTR	SoyBase	E_val: 1.00E-61	ISS
UniRef100_I1JJA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJA5_SOYBN	SoyBase	E_val: 1.00E-77	ISS

Expression Patterns of Glyma02g46100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g46100

Paralog	Evidence	Comments
Glyma14g02660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g46100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g291500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g46100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g46100

Limit To All Plant Sequences

>Glyma02g46100.2   sequence type=transcript   gene model=Glyma02g46100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTTTTTCACTGCTATTAAATTGCTTATTCATGATCAGTCACGCACACCCCGCTACTATATATACCCCACCACTACCTATTCTTCTCAATTCGCTCTTGCTTTGTTTACAGAAGTCCTCCATTCTCACAGCTAGGTGGTGGTGATTAGTGTATATATATACATACATGGTTGAAGTGGGTATTTATCAGATCCCTACGAGCAGTTTGGACCCATTTGCGGAGGCAAAAGAAACAGATGCACCAGGGGCGAAAGAATATGTTCATATCCGCATACAGCAGAGGAATGGGAAGAAGAGTCTCACCACAGTGCAAGGGCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTCAAAGACCTCAAGAAAGAGTTGTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGCGATCAGCGAAAGAACGTCTCTCACTTTCTCATTCATGCTCGCCTTGCTAGGAAGGACCAGATCAAGATTCATGGTTTCTGACCTTTCTTGTATTAATTAACATATGCCGCCGTTTATGAAATAAGTAACGAGTTTCGAATATTTGGTCATTTTCCTTCTGTATCATTGAAAATCATCTTAAATATATTACTACTTCATGTTGTGCTTTCAAGGACCATGTTTTTAGCTATTTGGACCTCAGAGTATTAATTTAACAATTCTAAATT

Coding sequences of Glyma02g46100

Limit To All Plant Sequences

>Glyma02g46100.1   sequence type=CDS   gene model=Glyma02g46100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAGTGGGTATTTATCAGATCCCTACGAGCAGTTTGGACCCATTTGCGGAGGCAAAAGAAACAGATGCACCAGGGGCGAAAGAATATGTTCATATCCGCATACAGCAGAGGAATGGGAAGAAGAGTCTCACCACAGTGCAAGGGCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTCAAAGACCTCAAGAAAGAGTTGTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGCGATCAGCGAAAGAACGTCTCTCACTTTCTCATTCATGCTCGCCTTGCTAGGAAGGACCAGATCAAGATTCATGGTTTCTGA

>Glyma02g46100.2   sequence type=CDS   gene model=Glyma02g46100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAGTGGGTATTTATCAGATCCCTACGAGCAGTTTGGACCCATTTGCGGAGGCAAAAGAAACAGATGCACCAGGGGCGAAAGAATATGTTCATATCCGCATACAGCAGAGGAATGGGAAGAAGAGTCTCACCACAGTGCAAGGGCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTCAAAGACCTCAAGAAAGAGTTGTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGCGATCAGCGAAAGAACGTCTCTCACTTTCTCATTCATGCTCGCCTTGCTAGGAAGGACCAGATCAAGATTCATGGTTTCTGA

Predicted protein sequences of Glyma02g46100

Limit To All Plant Sequences

>Glyma02g46100.1   sequence type=predicted peptide   gene model=Glyma02g46100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEVGIYQIPTSSLDPFAEAKETDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKELCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIHARLARKDQIKIHGF*

>Glyma02g46100.2   sequence type=predicted peptide   gene model=Glyma02g46100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEVGIYQIPTSSLDPFAEAKETDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKELCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIHARLARKDQIKIHGF*

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