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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20490 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). | chr3:7154178-7156382 REVERSE LENGTH=458 | SoyBase | E_val: 1.00E-47 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_Q7XPQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0053K19.23 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPQ0_ORYSJ | SoyBase | E_val: 7.00E-15 | ISS |
| UniRef100_UPI0002336F14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336F14 related cluster n=1 Tax=unknown RepID=UPI0002336F14 | SoyBase | E_val: 0 | ISS |
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Glyma02g46000 not represented in the dataset |
Glyma02g46000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g290600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g46000.2 sequence type=transcript gene model=Glyma02g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAACCTTACAGACTAAAAAAAAAAAACTGTGTTAGGATTTAGAAGTTAGGACAGAAGAGAAAAAAAAGAAAGAGCTGAAGACGCGATAAGTTTGAAGAGAGGAATCTTGTTCGCCACACTTGATCGTTCAGTCGCGCACCCGCGAATCAGAATTTCAATTCCTTCCATTTCCCCCTAAATTCAAATCCCATAAACCCTCCCTTATATACATTACAGTTACTTGCACCTCAATTCAATTTTCCTTTCAATTTCCATGGAAAACTTCGAAGTACCCTCATTTTCCCTAGGTCTCGACGAAACGCCCCCCCATTCCCCCATCCATCCATCTCCTTCTCCCGCCGACCTACACGTCTCTGACTCCGATCCCGAATCCCGACCCTACCCGCCGCGCCCCCTCCTCAAACGCTTCCGCCGCGACCTCCCGCCGCCGTGCCTCGACGCCGACGACGACATCGAGGAGTTCTCCTCGCAAGAAGATCCCGATCAAGGTCAGGGCATGCGTTTCCGTCGGCATGGAATCGGAATCATTCTGTGTGTAGCAGTTCGAAAGTTTCGTTGAATGGTAGCGGAGTTTTGACCCCTCATTCGTGTAGCAACTCTTCTTCTAGGGATAGGAAAAGAAAGGAACTTTCCAATGATGTTCCGGCTTCTTCTAGGTTAGAGACACGGAAGAGTGGCTTGATGTTTCCCAAGTTAAACACTAGTCCTCTCCGAAGGTTTCAATTGATTGATTCCGACTCCGATGATGCTGATGTTGATGTTGGTGCCGATAAAGTTAACCCTAACAGTCATTTGGAACAAGATAAGAAAACTTTGGTTGATTTGAATGGAAATGAGGATCTGTGGAAGGATTTTTCGCCAGTCAAGAATGTTTATGTTAATAGGTTTCAATTGCTTTCGGATTCTGATGATTTGGATGTTGATGTTGGTGCTGCCAACAAAGCTAACCTTGACAGTAATTTAGAAAAAAATAAGAAAACATTGCTTGATGAGGATCTATGGAAGGATTTTTCGCCAGTGAAGAATGTTTCTGTCCCAACTCCGGCCTTCAATGAGATGTGTGAAGAGTACTTTCGTTCTGCCTATTGCAAGGAAGTGGGTGGTGGTGATGTGTCTAAAAGTTTTAATGAGAGGAATCCTGGGGTTAGCTCTAGCTGCCAGAGGGATCAACAGCAACAGGAATCAACGGACCCTGTTCATCCTGCTCATAGTTATTTTTTCCATGAGGATCCGAGAATTCGGCGGTTAGTTTGCAGTCGCCTGCAGAATTTTAATCCACTAGGTACCATCAACACAGTGAATCAGCAACCTAATGTCTCACACATTGATTACATGAGGCAATTTGGCAATGGAGGAGCTTCAAACATGCAGGGAGTTCAAAATGGTCGTGTTAGCAACTCAACAAGGGGAAAAAATAAATCCAGCAATTTGAATGTTGAGGGATATTTTGATGCTTCTGGAGGCTGGATGGATCCCAAATTTGTTTCTCCATTCAGCCACGGGAAATCTTCTAGAAAGAAAGCAACAAAGAGGAATAGCACTAAGAATAGTGTCTCAAAAAGTAATAATAAAACAAACAAATCAAACCCTTCAAACCAATCATCTGAGGGCTGGGTGGAACCCAGGAGCTGCACCAGTTTGCCAAAGGATGCGGGCAAAAGGCGTGTTCAAGCAAGTGGTCAATCTGCTGGTCATTGGTTTACATCACCAGAAGGGAGAAAGGTTTATGTAAACAAAAGTGGGGAGGAGTTGACAGGCCGCAATGCTTACAGACAGTATCGGAAGGAGAGTGGAGCAGGATTCAAGAAATCAAGAAAGAAAACAGGTGCCAAGACGACAAATGCCAAGAAGAGAAACTGAACACTTGATGACAAGACATTTATTCCCCGCCTGGTCCACGTCCCATAATTTACTTGTGATCGTATGACTAGCAATACCCTATAGGTTCAATTCAATTTTGTTAAATTGCCCTAAATTTCCGGTTTCATGTTTTGGATGCGGACAAGGAAGCTAGGAATCCAGCGTGCAGCATCACATGAGGAAACTGAATTAAGGCCTTGTTGCTTAGTGAAGATTTGATGCTAAAAAAATCCTAGCAAGTAGCAAGTAGATATTGGGAGCTTATGTAAGTGGTTCTGTACAGTACACACGGACCTAATGACTTGGGCCATCCTGAAATAATGATTCACTTTTCTTTTATTAGAATCCACAATGATTCTTCGTTTCATTCTTGATTCGCCACTTGGCTCTCTTTGTGCTTATGATCGAGCTTGTTGCGTTGTTCCGTTAT
>Glyma02g46000.1 sequence type=CDS gene model=Glyma02g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAACTTCGAAGTACCCTCATTTTCCCTAGGTCTCGACGAAACGCCCCCCCATTCCCCCATCCATCCATCTCCTTCTCCCGCCGACCTACACGTCTCTGACTCCGATCCCGAATCCCGACCCTACCCGCCGCGCCCCCTCCTCAAACGCTTCCGCCGCGACCTCCCGCCGCCGTGCCTCGACGCCGACGACGACATCGAGGAGTTCTCCTCGCAAGAAGATCCCGATCAAGGGCATGCGTTTCCGTCGGCATGGAATCGGAATCATTCTGTGTGTAGCAGTTCGAAAGTTTCGTTGAATGGTAGCGGAGTTTTGACCCCTCATTCGTGTAGCAACTCTTCTTCTAGGGATAGGAAAAGAAAGGAACTTTCCAATGATGTTCCGGCTTCTTCTAGGTTAGAGACACGGAAGAGTGGCTTGATGTTTCCCAAGTTAAACACTAGTCCTCTCCGAAGGTTTCAATTGATTGATTCCGACTCCGATGATGCTGATGTTGATGTTGGTGCCGATAAAGTTAACCCTAACAGTCATTTGGAACAAGATAAGAAAACTTTGGTTGATTTGAATGGAAATGAGGATCTGTGGAAGGATTTTTCGCCAGTCAAGAATGTTTATGTTAATAGGTTTCAATTGCTTTCGGATTCTGATGATTTGGATGTTGATGTTGGTGCTGCCAACAAAGCTAACCTTGACAGTAATTTAGAAAAAAATAAGAAAACATTGCTTGATGAGGATCTATGGAAGGATTTTTCGCCAGTGAAGAATGTTTCTGTCCCAACTCCGGCCTTCAATGAGATGTGTGAAGAGTACTTTCGTTCTGCCTATTGCAAGGAAGTGGGTGGTGGTGATGTGTCTAAAAGTTTTAATGAGAGGAATCCTGGGGTTAGCTCTAGCTGCCAGAGGGATCAACAGCAACAGGAATCAACGGACCCTGTTCATCCTGCTCATAGTTATTTTTTCCATGAGGATCCGAGAATTCGGCGGTTAGTTTGCAGTCGCCTGCAGAATTTTAATCCACTAGGTACCATCAACACAGTGAATCAGCAACCTAATGTCTCACACATTGATTACATGAGGCAATTTGGCAATGGAGGAGCTTCAAACATGCAGGGAGTTCAAAATGGTCGTGTTAGCAACTCAACAAGGGGAAAAAATAAATCCAGCAATTTGAATGTTGAGGGATATTTTGATGCTTCTGGAGGCTGGATGGATCCCAAATTTGTTTCTCCATTCAGCCACGGGAAATCTTCTAGAAAGAAAGCAACAAAGAGGAATAGCACTAAGAATAGTGTCTCAAAAAGTAATAATAAAACAAACAAATCAAACCCTTCAAACCAATCATCTGAGGGCTGGGTGGAACCCAGGAGCTGCACCAGTTTGCCAAAGGATGCGGGCAAAAGGCGTGTTCAAGCAAGTGGTCAATCTGCTGGTCATTGGTTTACATCACCAGAAGGGAGAAAGGTTTATGTAAACAAAAGTGGGGAGGAGTTGACAGGCCGCAATGCTTACAGACAGTATCGGAAGGAGAGTGGAGCAGGATTCAAGAAATCAAGAAAGAAAACAGGTGCCAAGACGACAAATGCCAAGAAGAGAAACTGA >Glyma02g46000.2 sequence type=CDS gene model=Glyma02g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCCCAAGTTAAACACTAGTCCTCTCCGAAGGTTTCAATTGATTGATTCCGACTCCGATGATGCTGATGTTGATGTTGGTGCCGATAAAGTTAACCCTAACAGTCATTTGGAACAAGATAAGAAAACTTTGGTTGATTTGAATGGAAATGAGGATCTGTGGAAGGATTTTTCGCCAGTCAAGAATGTTTATGTTAATAGGTTTCAATTGCTTTCGGATTCTGATGATTTGGATGTTGATGTTGGTGCTGCCAACAAAGCTAACCTTGACAGTAATTTAGAAAAAAATAAGAAAACATTGCTTGATGAGGATCTATGGAAGGATTTTTCGCCAGTGAAGAATGTTTCTGTCCCAACTCCGGCCTTCAATGAGATGTGTGAAGAGTACTTTCGTTCTGCCTATTGCAAGGAAGTGGGTGGTGGTGATGTGTCTAAAAGTTTTAATGAGAGGAATCCTGGGGTTAGCTCTAGCTGCCAGAGGGATCAACAGCAACAGGAATCAACGGACCCTGTTCATCCTGCTCATAGTTATTTTTTCCATGAGGATCCGAGAATTCGGCGGTTAGTTTGCAGTCGCCTGCAGAATTTTAATCCACTAGGTACCATCAACACAGTGAATCAGCAACCTAATGTCTCACACATTGATTACATGAGGCAATTTGGCAATGGAGGAGCTTCAAACATGCAGGGAGTTCAAAATGGTCGTGTTAGCAACTCAACAAGGGGAAAAAATAAATCCAGCAATTTGAATGTTGAGGGATATTTTGATGCTTCTGGAGGCTGGATGGATCCCAAATTTGTTTCTCCATTCAGCCACGGGAAATCTTCTAGAAAGAAAGCAACAAAGAGGAATAGCACTAAGAATAGTGTCTCAAAAAGTAATAATAAAACAAACAAATCAAACCCTTCAAACCAATCATCTGAGGGCTGGGTGGAACCCAGGAGCTGCACCAGTTTGCCAAAGGATGCGGGCAAAAGGCGTGTTCAAGCAAGTGGTCAATCTGCTGGTCATTGGTTTACATCACCAGAAGGGAGAAAGGTTTATGTAAACAAAAGTGGGGAGGAGTTGACAGGCCGCAATGCTTACAGACAGTATCGGAAGGAGAGTGGAGCAGGATTCAAGAAATCAAGAAAGAAAACAGGTGCCAAGACGACAAATGCCAAGAAGAGAAACTGA
>Glyma02g46000.1 sequence type=predicted peptide gene model=Glyma02g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENFEVPSFSLGLDETPPHSPIHPSPSPADLHVSDSDPESRPYPPRPLLKRFRRDLPPPCLDADDDIEEFSSQEDPDQGHAFPSAWNRNHSVCSSSKVSLNGSGVLTPHSCSNSSSRDRKRKELSNDVPASSRLETRKSGLMFPKLNTSPLRRFQLIDSDSDDADVDVGADKVNPNSHLEQDKKTLVDLNGNEDLWKDFSPVKNVYVNRFQLLSDSDDLDVDVGAANKANLDSNLEKNKKTLLDEDLWKDFSPVKNVSVPTPAFNEMCEEYFRSAYCKEVGGGDVSKSFNERNPGVSSSCQRDQQQQESTDPVHPAHSYFFHEDPRIRRLVCSRLQNFNPLGTINTVNQQPNVSHIDYMRQFGNGGASNMQGVQNGRVSNSTRGKNKSSNLNVEGYFDASGGWMDPKFVSPFSHGKSSRKKATKRNSTKNSVSKSNNKTNKSNPSNQSSEGWVEPRSCTSLPKDAGKRRVQASGQSAGHWFTSPEGRKVYVNKSGEELTGRNAYRQYRKESGAGFKKSRKKTGAKTTNAKKRN* >Glyma02g46000.2 sequence type=predicted peptide gene model=Glyma02g46000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFPKLNTSPLRRFQLIDSDSDDADVDVGADKVNPNSHLEQDKKTLVDLNGNEDLWKDFSPVKNVYVNRFQLLSDSDDLDVDVGAANKANLDSNLEKNKKTLLDEDLWKDFSPVKNVSVPTPAFNEMCEEYFRSAYCKEVGGGDVSKSFNERNPGVSSSCQRDQQQQESTDPVHPAHSYFFHEDPRIRRLVCSRLQNFNPLGTINTVNQQPNVSHIDYMRQFGNGGASNMQGVQNGRVSNSTRGKNKSSNLNVEGYFDASGGWMDPKFVSPFSHGKSSRKKATKRNSTKNSVSKSNNKTNKSNPSNQSSEGWVEPRSCTSLPKDAGKRRVQASGQSAGHWFTSPEGRKVYVNKSGEELTGRNAYRQYRKESGAGFKKSRKKTGAKTTNAKKRN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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