Glyma02g45970 - SoyBase

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Report for Sequence Feature Glyma02g45970

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50081585
stop:	50083746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27180	AT	Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR-NBS-LRR class), putative \| chr1:9439859-9445818 FORWARD LENGTH=1556	SoyBase	E_val: 6.00E-42	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF247	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PTHR23155:SF252	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01582	PFAM	TIR domain	JGI		ISS
UniRef100_G7K8H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TMV resistance protein N n=1 Tax=Medicago truncatula RepID=G7K8H7_MEDTR	SoyBase	E_val: 1.00E-96	ISS
UniRef100_I1JJ81	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJ81_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g45970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g45970 not represented in the dataset	Glyma02g45970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45970

Paralog	Evidence	Comments
Glyma14g02770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g290300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g45970

Limit To All Plant Sequences

>Glyma02g45970.2   sequence type=transcript   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAATATCCAAGTTGATTAGAAATTAAAAAAAATGAATATTTAAATAAGTCAAGTCAAGCTTATCGGCTGAGAAGCCAAGGGTTTTTTTAATCAGATTATACGTAGGGAGCTAACTGAGGGAGGCATTTTTTGTACCGAGATGCGCATTAATGAAAAATGAATAATGAATAAGAACACGAGGCAGGGCAGAGGAGAAGGCCTTGTGATTCATCATGACGAATGAACCCAACAACAAGTACGATGTTTTTCTGTGTTTAGTTGGCCCAGATACCCGCTACACCTTCGCTGGTAATCTCTATAATGCTTTGCGCCGCAACAGAATCAATACCTTTTTCACAGAAGATAATCATCATGATGAGCTACTACTCATGAATGGCGACCAAATTTCACCCTTTGCTCTAAGAGCAATTAAAGAATCAAACTTGTTAATTGTTGTTCTCTCTCCAAACTACGCATCATCCCCAAGGAATCTTGATGAATTTGTGGCCATCGTTCGGTGTATAAAGAGGAAGAAGCAACTGCTGCTTCCCGTCTTTTACAAAGTGGAACGAGGGGAAATAATGGATGCAATATTTAGTGGACCTGATCAACAAGCGCTCTGTGTATTCGAAGAAAGATTTGGAGATTACAAAGAGAGGGTGAATGAATGGAAGGACGCCTTGCTAGAAGTCTACGGTTGGACTGCTATGGAATACCAAAATGGGTCCGGATACGAATATGAATTCATCCGAGAGATTGTTGATATAGCCAAGAGGCGCCAGCGCCGCCGATATGATGTTTTTCTGAGTTTTAGGGGAAGAGATACCCGCCACTCTTTCACAGGTTTTCTCTATAAAGCCTTTTGCCGGGAGGGATTCTACGTCTTCATGGATGATGAGGGATTGGAGGGTGGGAATCAAATTTCACCTACGATTATGGGAGCAATTGAAAGATCAAGGCTTTCAATTGTAGTGTTCTCTGAAAACTATGGGTATTCCACGTGGTGTCTTGATGAACTTTCCAAGATCATTGAGTGCGTGAAAACCAGGAATCAAATGGTTTGGCCAATATTTTACAATGTGGAAAAGTCCGATGTATGCAATCAAACAAAAAGTTATGGTGATGCCATGACTGCCCAGGAGAAAAGATTTGGAAAGGACTCTGGGAAGGTGCATAAATGGAGGTCTGCTTTGTCTGAAATCGCCAACTTGGAAGGAGAGCATCTCAGGGAAAATCAGTATGTACCAATATGAATTTATCGAAAGGATTGTGGAAAAGGCCATTAATATACCAAGTCCTTGCTCCAATGACAGCTACGAGGAAGAGTCAAGAGTGTCAAAATGCACGCATTGGGAGATTGGGAGCTGTGTAGTCAGCTGATAGTGACATCAGCAAGCAGCCTTGAATTTATGTGTGCTTAACGATGTTGTTACTATATCCAGTTCAATTCTCAAGGTTTATTATGTTCCTTTTACATCTTGTGTAATTCTTGAGGTCTCGTGTTTTTCTTTTTTTTTGGTGTGTACCAAGGTCCAAGGATTATGTCTGAGATTAACATCTCCCTTTTAATACTACTACTCTCCCTCACTCTCTCACTAGCTAACAACAAACCAAG

>Glyma02g45970.3   sequence type=transcript   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAATATCCAAGTTGATTAGAAATTAAAAAAAATGAATATTTAAATAAGTCAAGTCAAGCTTATCGGCTGAGAAGCCAAGGGTTTTTTTAATCAGATTATACGTAGGGAGCTAACTGAGGGAGGCATTTTTTGTACCGAGATGCGCATTAATGAAAAATGAATAATGAATAAGAACACGAGGCAGGGCAGAGGAGAAGGCCTTGTGATTCATCATGACGAATGAACCCAACAACAAGTACGATGTTTTTCTGTGTTTAGTTGGCCCAGATACCCGCTACACCTTCGCTGGTAATCTCTATAATGCTTTGCGCCGCAACAGAATCAATACCTTTTTCACAGAAGATAATCATCATGATGAGCTACTACTCATGAATGGCGACCAAATTTCACCCTTTGCTCTAAGAGCAATTAAAGAATCAAACTTGTTAATTGTTGTTCTCTCTCCAAACTACGCATCATCCCCAAGGAATCTTGATGAATTTGTGGCCATCGTTCGGTGTATAAAGAGGAAGAAGCAACTGCTGCTTCCCGTCTTTTACAAAGTGGAACGAGGGGAAATAATGGATGCAATATTTAGTGGACCTGATCAACAAGCGCTCTGTGTATTCGAAGAAAGATTTGGAGATTACAAAGAGAGGGTGAATGAATGGAAGGACGCCTTGCTAGAAGTCTACGGTTGGACTGCTATGGAATACCAAAATGGGTCCGGATACGAATATGAATTCATCCGAGAGATTGTTGATATAGCCAAGAGGCGCCAGCGCCGCCGATATGATGTTTTTCTGAGTTTTAGGGGAAGAGATACCCGCCACTCTTTCACAGGTTTTCTCTATAAAGCCTTTTGCCGGGAGGGATTCTACGTCTTCATGGATGATGAGGGATTGGAGGGTGGGAATCAAATTTCACCTACGATTATGGGAGCAATTGAAAGATCAAGGCTTTCAATTGTAGTGTTCTCTGAAAACTATGGGTATTCCACGTGGTGTCTTGATGAACTTTCCAAGATCATTGAGTGCGTGAAAACCAGGAATCAAATGGTTTGGCCAATATTTTACAATGTGGAAAAGTCCGATGTATGCAATCAAACAAAAAGTTATGGTGATGCCATGACTGCCCAGGAGAAAAGATTTGGAAAGGACTCTGGGAAGGTGCATAAATGGAGGTCTGCTTTGTCTGAAATCGCCAACTTGGAAGGAGAGCATCTCAGGGAAAATCAGTATGTAATGCTTTTAATTAATTTTGGCTGATCAAGTTAATTTGTTGTTTATTAATGTCTATTAGTTCTAGTTGCTGATTAAATGACTATTAATCCCTTAATAATATGCCTCCCTCTTGACCATCTGTGAAATGGTCAAATAAATGGTAAATAGGAAATGTATAGTTCTTGTCCT

Coding sequences of Glyma02g45970

Limit To All Plant Sequences

>Glyma02g45970.1   sequence type=CDS   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAATGAACCCAACAACAAGTACGATGTTTTTCTGTGTTTAGTTGGCCCAGATACCCGCTACACCTTCGCTGGTAATCTCTATAATGCTTTGCGCCGCAACAGAATCAATACCTTTTTCACAGAAGATAATCATCATGATGAGCTACTACTCATGAATGGCGACCAAATTTCACCCTTTGCTCTAAGAGCAATTAAAGAATCAAACTTGTTAATTGTTGTTCTCTCTCCAAACTACGCATCATCCCCAAGGAATCTTGATGAATTTGTGGCCATCGTTCGGTGTATAAAGAGGAAGAAGCAACTGCTGCTTCCCGTCTTTTACAAAGTGGAACGAGGGGAAATAATGGATGCAATATTTAGTGGACCTGATCAACAAGCGCTCTGTGTATTCGAAGAAAGATTTGGAGATTACAAAGAGAGGGTGAATGAATGGAAGGACGCCTTGCTAGAAGTCTACGGTTGGACTGCTATGGAATACCAAAATGGGTCCGGATACGAATATGAATTCATCCGAGAGATTGTTGATATAGCCAAGAGGCGCCAGCGCCGCCGATATGATGTTTTTCTGAGTTTTAGGGGAAGAGATACCCGCCACTCTTTCACAGGTTTTCTCTATAAAGCCTTTTGCCGGGAGGGATTCTACGTCTTCATGGATGATGAGGGATTGGAGGGTGGGAATCAAATTTCACCTACGATTATGGGAGCAATTGAAAGATCAAGGCTTTCAATTGTAGTGTTCTCTGAAAACTATGGGTATTCCACGTGGTGTCTTGATGAACTTTCCAAGATCATTGAGTGCGTGAAAACCAGGAATCAAATGGTTTGGCCAATATTTTACAATGTGGAAAAGTCCGATGTATGCAATCAAACAAAAAGTTATGGTGATGCCATGACTGCCCAGGAGAAAAGATTTGGAAAGGACTCTGGGAAGGTGCATAAATGGAGGTCTGCTTTGTCTGAAATCGCCAACTTGGAAGGAGAGCATCTCAGGGAAAATCAGTACCAATATGAATTTATCGAAAGGATTGTGGAAAAGGCCATTAATATACCAAGTCCTTGCTCCAATGACAGCTACGAGGAAGAGTCAAGAGTGTCAAAATGCACGCATTGGGAGATTGGGAGCTGTGTAGTCAGCTGA

>Glyma02g45970.2   sequence type=CDS   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAATGAACCCAACAACAAGTACGATGTTTTTCTGTGTTTAGTTGGCCCAGATACCCGCTACACCTTCGCTGGTAATCTCTATAATGCTTTGCGCCGCAACAGAATCAATACCTTTTTCACAGAAGATAATCATCATGATGAGCTACTACTCATGAATGGCGACCAAATTTCACCCTTTGCTCTAAGAGCAATTAAAGAATCAAACTTGTTAATTGTTGTTCTCTCTCCAAACTACGCATCATCCCCAAGGAATCTTGATGAATTTGTGGCCATCGTTCGGTGTATAAAGAGGAAGAAGCAACTGCTGCTTCCCGTCTTTTACAAAGTGGAACGAGGGGAAATAATGGATGCAATATTTAGTGGACCTGATCAACAAGCGCTCTGTGTATTCGAAGAAAGATTTGGAGATTACAAAGAGAGGGTGAATGAATGGAAGGACGCCTTGCTAGAAGTCTACGGTTGGACTGCTATGGAATACCAAAATGGGTCCGGATACGAATATGAATTCATCCGAGAGATTGTTGATATAGCCAAGAGGCGCCAGCGCCGCCGATATGATGTTTTTCTGAGTTTTAGGGGAAGAGATACCCGCCACTCTTTCACAGGTTTTCTCTATAAAGCCTTTTGCCGGGAGGGATTCTACGTCTTCATGGATGATGAGGGATTGGAGGGTGGGAATCAAATTTCACCTACGATTATGGGAGCAATTGAAAGATCAAGGCTTTCAATTGTAGTGTTCTCTGAAAACTATGGGTATTCCACGTGGTGTCTTGATGAACTTTCCAAGATCATTGAGTGCGTGAAAACCAGGAATCAAATGGTTTGGCCAATATTTTACAATGTGGAAAAGTCCGATGTATGCAATCAAACAAAAAGTTATGGTGATGCCATGACTGCCCAGGAGAAAAGATTTGGAAAGGACTCTGGGAAGGTGCATAAATGGAGGTCTGCTTTGTCTGAAATCGCCAACTTGGAAGGAGAGCATCTCAGGGAAAATCAGTATGTACCAATATGA

>Glyma02g45970.3   sequence type=CDS   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAATGAACCCAACAACAAGTACGATGTTTTTCTGTGTTTAGTTGGCCCAGATACCCGCTACACCTTCGCTGGTAATCTCTATAATGCTTTGCGCCGCAACAGAATCAATACCTTTTTCACAGAAGATAATCATCATGATGAGCTACTACTCATGAATGGCGACCAAATTTCACCCTTTGCTCTAAGAGCAATTAAAGAATCAAACTTGTTAATTGTTGTTCTCTCTCCAAACTACGCATCATCCCCAAGGAATCTTGATGAATTTGTGGCCATCGTTCGGTGTATAAAGAGGAAGAAGCAACTGCTGCTTCCCGTCTTTTACAAAGTGGAACGAGGGGAAATAATGGATGCAATATTTAGTGGACCTGATCAACAAGCGCTCTGTGTATTCGAAGAAAGATTTGGAGATTACAAAGAGAGGGTGAATGAATGGAAGGACGCCTTGCTAGAAGTCTACGGTTGGACTGCTATGGAATACCAAAATGGGTCCGGATACGAATATGAATTCATCCGAGAGATTGTTGATATAGCCAAGAGGCGCCAGCGCCGCCGATATGATGTTTTTCTGAGTTTTAGGGGAAGAGATACCCGCCACTCTTTCACAGGTTTTCTCTATAAAGCCTTTTGCCGGGAGGGATTCTACGTCTTCATGGATGATGAGGGATTGGAGGGTGGGAATCAAATTTCACCTACGATTATGGGAGCAATTGAAAGATCAAGGCTTTCAATTGTAGTGTTCTCTGAAAACTATGGGTATTCCACGTGGTGTCTTGATGAACTTTCCAAGATCATTGAGTGCGTGAAAACCAGGAATCAAATGGTTTGGCCAATATTTTACAATGTGGAAAAGTCCGATGTATGCAATCAAACAAAAAGTTATGGTGATGCCATGACTGCCCAGGAGAAAAGATTTGGAAAGGACTCTGGGAAGGTGCATAAATGGAGGTCTGCTTTGTCTGAAATCGCCAACTTGGAAGGAGAGCATCTCAGGGAAAATCAGTATGTAATGCTTTTAATTAATTTTGGCTGA

Predicted protein sequences of Glyma02g45970

Limit To All Plant Sequences

>Glyma02g45970.1   sequence type=predicted peptide   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNEPNNKYDVFLCLVGPDTRYTFAGNLYNALRRNRINTFFTEDNHHDELLLMNGDQISPFALRAIKESNLLIVVLSPNYASSPRNLDEFVAIVRCIKRKKQLLLPVFYKVERGEIMDAIFSGPDQQALCVFEERFGDYKERVNEWKDALLEVYGWTAMEYQNGSGYEYEFIREIVDIAKRRQRRRYDVFLSFRGRDTRHSFTGFLYKAFCREGFYVFMDDEGLEGGNQISPTIMGAIERSRLSIVVFSENYGYSTWCLDELSKIIECVKTRNQMVWPIFYNVEKSDVCNQTKSYGDAMTAQEKRFGKDSGKVHKWRSALSEIANLEGEHLRENQYQYEFIERIVEKAINIPSPCSNDSYEEESRVSKCTHWEIGSCVVS*

>Glyma02g45970.2   sequence type=predicted peptide   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNEPNNKYDVFLCLVGPDTRYTFAGNLYNALRRNRINTFFTEDNHHDELLLMNGDQISPFALRAIKESNLLIVVLSPNYASSPRNLDEFVAIVRCIKRKKQLLLPVFYKVERGEIMDAIFSGPDQQALCVFEERFGDYKERVNEWKDALLEVYGWTAMEYQNGSGYEYEFIREIVDIAKRRQRRRYDVFLSFRGRDTRHSFTGFLYKAFCREGFYVFMDDEGLEGGNQISPTIMGAIERSRLSIVVFSENYGYSTWCLDELSKIIECVKTRNQMVWPIFYNVEKSDVCNQTKSYGDAMTAQEKRFGKDSGKVHKWRSALSEIANLEGEHLRENQYVPI*

>Glyma02g45970.3   sequence type=predicted peptide   gene model=Glyma02g45970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNEPNNKYDVFLCLVGPDTRYTFAGNLYNALRRNRINTFFTEDNHHDELLLMNGDQISPFALRAIKESNLLIVVLSPNYASSPRNLDEFVAIVRCIKRKKQLLLPVFYKVERGEIMDAIFSGPDQQALCVFEERFGDYKERVNEWKDALLEVYGWTAMEYQNGSGYEYEFIREIVDIAKRRQRRRYDVFLSFRGRDTRHSFTGFLYKAFCREGFYVFMDDEGLEGGNQISPTIMGAIERSRLSIVVFSENYGYSTWCLDELSKIIECVKTRNQMVWPIFYNVEKSDVCNQTKSYGDAMTAQEKRFGKDSGKVHKWRSALSEIANLEGEHLRENQYVMLLINFG*

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