Glyma02g45960 - SoyBase

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Report for Sequence Feature Glyma02g45960

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50058602
stop:	50081372
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06530	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr3:2022596-2033637 FORWARD LENGTH=2197	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1837	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13457	Panther	BAP28	JGI		ISS
PF08146	PFAM	BP28CT (NUC211) domain	JGI		ISS
PF12397	PFAM	U3 small nucleolar RNA-associated protein 10	JGI		ISS
UniRef100_G7K8G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HEAT repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K8G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336F13	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336F13 related cluster n=1 Tax=unknown RepID=UPI0002336F13	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g45960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45960

Paralog	Evidence	Comments
Glyma14g02780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g290200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g45960

Limit To All Plant Sequences

>Glyma02g45960.2   sequence type=CDS   gene model=Glyma02g45960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCTCCATAGCCTCGCAGTTAGAAGCTATCAGATCCTTCGCCAAAACCGATTCTGATCCTCTCAAGAGGCCATACACTCGCCCTTCCATCTTGTACGATCCCAAAAAAGCCGCTGACATCAGCACCGAAACTATTTTCACCGAAGCTCTTCGAGGCTTAGAGATTCTTATTGGCATGGATGAGCGGTTCAGGAACTATAAGAACGATTTGTTTAGCCACAGAAGTATAGAGTTGGATAGAGAGTTAATGGGAATAGAACAGAACAATCAACTTAATGTCTCCATTGCTTCATACTTGAGACTACTTTCTGGATACTTTCTTCATACCTCTGCTCTTCAAACGCTCGAGTACTTGATACGTAGACACAAGATTCATGTATACAACAATGAGGATTTGATTTTGTGTACTTTGCCGTACCACGACGAGCCCGAATTTGTTCGAATAGTACAGATACTCGATACAAGGAATACTAAATGGGGATTTCTTGATGGTGTGAAAGCCTCTGGTGCACGGCTACCTAGAATGGTCATAGTGCAGCAGTGCATCCGTGATAAGGGCATATTAGATGCTCTATGTAACTATGCATCTCCATCAAAAAAGTCTCGACCTTCAATGCCTGCAATTCGCTTTTGTACTGCTGTTTTCGTTGAAGTTTTGGGTACTGTTGTGACTGTTGATGATGATCTCGTAAAGAGGATACTTCCTTTTGTGAGTCTTCAGCCTGGCATTAAGGGGGTTTCAGATCACAAGGCTGGTTCTTTGATGATCATTGGCTTGCTTGGAAACAAAACTGCATTAGCTCCTAAACTTTTGAATAGTTTGATACGTTTGGTTGCTGAGGTTGCTCGTCAGGAGGCTACAGAGTTGACAGATCTCCATTGGTTTCGATTGTCCCTTATTACCTTAATTAGTCTTGTTCAGTCTCAAAATGTTGAAATACTCCCAATGAAGGCCTTGGAGATATTAAAGGAAATAAGGGACCTGGCAGGGGTTTTATTAGAATTATCTGAGGAGTTCAATATTGAAAAGTTTCTCCTTGTGCTTTTGGACTCCCTGATTGACTGCAGTTCTTCTGATGAATACTGTCAGCGGACTTTGCTATCCTTAATAGAAAAAGTCCCCATAAATGGTCTTGTTTATCATGTGGTCACCAAGATCCTTTCAACTTGTGTGAAATTATCACAAAAAGTTAGCGACTCAACTTCTTCCGTGTCAGCTGGGTGGGCAAAAAAGATTCTGTTTGTCGTCAATACAAAATACCCTTCTGAATTACGAGGTGCAGCTCATCATTTCCTTCAGGATAACAAAGCACGTTCTAAGAAAGATGATTCATTGTATAAGGTTTTATGTAAGATGTTGGATGGGAATTCGGATTCGTCACTTGATATTTCAGACTCAAATGTTTGGTTGGGCCTGTATCATCCAAAGGCTGATGTTCGACGTGCTACACTGCTTGATTTAAATAATTCCGTTATCCTGAAAGCCAAGGCAGTTGGTTTAGAGAATCTTATAAACATCCAAGAGGACATATTAAGACAGCTTGAGGATAAAGATCTAACAGTTGTTCAAGCAGCTTTACGTGTTGATGGCTTGCCGAATGTAATAGATTCTTCTAAGCTTCTTGATGCACTACAAAAAGTGCTAAGAAGATGCACTGACAAACTGCTGTCAGGTTCAGCTGATAACTATAGTCTAAATGGTGAAGTTGCTGTCACTTGTCTAAAGAATGCCATCTCCTACTTCAGTGATCATACTGATTACTTGAAGAATGTTGCTGCTATGATTTTTCCGTTACTCCTTGTTCTACCACAGACACAGAGCTTGAATTTAAAGGCTCTGGGACTAGTCAACAAAATAAACTGGCCACTTTATCAGAATATTGTCGTGTCTTCTTTTGGAGAAGGGACATTGATACCTGGAAGTTTATCTTCAATTAACTTGAAGACTATTGATAACATGGCTAAGAATTTCATGGTCCACCCCAAAGAGCATATTGCTTGGTTTGTTGAAAGCTGCAGTGATTTGGAGTTGTCAAAGACACTCTTCTTTTTTGTTCTTTTGCAGTCTCTTTTGATAAAACCAAAAGATGAAGACATTTATACACTATTTGAATGTGTATTTCCTATTCTAAAGGCTGAGTGGGAAACATCAGTGACAGCTGGTGATGCCTCATTGGATGAGTTCAAGCCTGAAGTGTTAGACTGGGATTGCAGTGCATTCTTTAATGAGCTTTTGTATGTCAAGCTGAGACATCTAAATGTGAAGGTTATGATTTGCATATTTTGGAGGCTAGCACAACTAATATCAGTACTACCTTCTGACATTCTGCTTCATGATGATGATAAGTGGGTCAACAAGATAAGGGATCTGTTTGTATTTTTTGCTTCCTCTAAATTGAAGCATACATTCCGCGAACACCTCCATTACTTAGCAGCACAGTGCAGAATATCACCTCCCCGCCTCTTATCTAAGTTTTTCACAGATGAAGGTGTTACTGCTGCAATTCAGGTTGAAAGTCTTCAATGCTATGCATTTCTTTGTAGCCTGTCGCAAGATAAATGGCAAATTGAACTTTTAGCTGAATTTCCTTCTGTTCTTGTTCCATTTGCGAGTGATAATCAGTCTATAAGGGTTGCTGCCATGAGCTGTATTGATTCATTGCGTACATTGTGGTGTCATGTTGAGCGTTCTGGCAAGAAAAATGGTAACAATGCAACGTGGATCCATTTTTTGGGTGATGTTTTGGCATTGATGGATCAACAAAAAACATTCATATTGTCCGACAAGAAATTTCTTCCTTCATTGTTTGCATCTGCTTTTCGCTCATCCTGTCCAAACATCTTGGAGCCTCGAAACATCTTGGTACCTCAAGATATAGAAAAAAGGTTTGACCAGCCTACAAAAATAAAAATTCTCGGCTTCATTTTGGGTTCCACTCTTAAATTCTCTAACTACGGGAAGCTAATGATTTTATCTTTATTCAAAGGAATTGGGAATGCCCTTATGCACATTCCAGAAGTTGGGCCATTGTTGTCCTCTTTTCTGGAGCAGTACTATGATGAGCTCAATAAGTCTTGTCCAAAATTGTCAAACACTGAAACTCAGATAGTGTGCCTTTTGCTGGAGAGCTGTGTTATGTCATCTCCCTCTGGTGGAAATGATCTTCAAAATCTTTTACTGAAAGCTTTGCGGTTGGGTGCCATGACTTCGGATGACCCTGCCTGTGTAAAGCCTTGCATCACTGTCTTGAACAAACTTAACAGTCAATTCTATATGGAGTTGAAGAATGAAGTAAAGGAGGGTTTATTTTGTGAGCTCGTGTTTTTGTGGCATAATGATAATGGTGATGTACAACGTGCAACTAAAGAGGCATTAATGCGCATCGATATTAGTTTCTCAACTGTTGGCCACATGCTTGATCTTATACTTGCACAGAAGAGTTGTATAAGTAGTTCAGCAGAAGAAAAGATGGTGAAGAAACAAAAATTCATAGGACATCAAGAAGCAGGATATCCTCCTAATGACATATCCAGAAGAGATAATCCAGTCTACATCCTTAGTTCCCTTCTTGATGTTTTGCTACTGAAGAAGGACATAACAAACAGGCATTTACTTTTAGGGCCCTTATTTAAGCTTCTTAGCAAGGTGTTTTCAGGTGAATGGGTGAATGGTGCCTATTCCCCGGTGAGAAGGTTAAGCCAACCTTCAAGTCCTTCTGAAGCCAACAATTACACAATATATCATATTCAACAGACTCTGTTGATAATCCTGGAGGATATAATTATTTCTCTTAAAAGCATGGCTCCGCTAAATGAAAAAATAATAAGTGAAATTAACATCAAGCTATTGATAGAGTGTGCCCGGAAATCCCCCGTTGCAGTCACCCGCAACCATGTATTTTCTGTACTTTCTGCTGTTACCAGAGTCTTTCCAGGCGAAGTTTTGGAGCATATGCTTGATATTCTAGAAGTTATTGGACAAGCAGCTGTCACACAGATTGACAGTCATTCAAAGCATGTTTTTGAGGATCTTATATCTGCAATTGTTCCGTGTTGGCTGGCTAAGACAGATGATGTGGAGAAATTACTAATGATTTTCATGGATATATTGCCTGAAATCGTTGAGCACAGAAGGCTGTCATTTGTGTTATATCTATTAAGAACTTTGGGTGAGGGTAAAAGCTTAGCCTCATTGCTTATCCTACTTTTGCGTTCATTAATTTCAAGGAAAGCTGCCTGTTTCCTTAATGTCAAGACACGAGATGATTTAACATTTTATACTGGGGAATGGGAATATAAATTTGCAGTGCAAATTTGTGAACAATATACGAGTATGATTTGGCTTCCTTCTTTAGTCATGCTGCTTGAGCAGAGGGGAAATAGTGATGTTGACCAGGCACTGTTTCTGGAATTGTTTATTGTAATGCAATTTTCCTTGCAAAAGTTGCAAGATCCAGAATTTGTGTTTAAGTTGGAATCAGGAGAAGATACTGCAGTCATTCAGAGGGCACTAGGTGAGCTTATGGAGCAGGTTGTTTTACTCTTGCAACTTGTAGATGCAAGAAAAAAACAACTGAATTTCCCTGTAATTCTGAGGAGAGAGTTGAAGGAAACTATGCGAGCAGTTGTAAGGAATCTAACAACAGTCATGATACCTGTCATATATTTTAGGAGCATAATTAAATTGCTTCGTCATGCAGACAAGAATGTAGGAAAAAAGGCTCTTGGGCTGTTATGTGAGGTTGCAAGAAATCACAAAAATGTCAGCTTAAAGCTTAAAGGCAATAAAGGTTCAAGGTCAACTCCAAGTTTTCTTTTGCTTCATATGAATGAAACTTCTCAAGAATCACTTAATAAATTGTGTTTAGAAATTATTCGAGTACTTGATGATTCATCAAATACCTCCTTGAAAGTGGCAGCAGTTTCAGCATTAGAAGTTCTAGCTGAAAGATTTCCTTCTAATAATTCCATCTTTAGTCTGTGCCTTGGATCTGTTACAAGACATATTGTGTCTCATAACTTGGCTGTGACTTCTAGCTGCCTCAGAACAACTGCTGCCCTGATCAATGTTCTAGGTCCAAAATCACTGGCAGAACTTCCCAAGATTATGGACAATGTGATGAAGTCATCTCGTCGAGTATTGGCTAGTTTGGATAAGAAACCCGAAACCACCGATGTTTTATCAGCCTCAAATGAATCCCATTTTTATGTTCTCATCACTTTGGAGGCAGTCGTGGACAAGCTTGGTGGATTTTTAAATCCATATCTCACAAATATCATGGAGCTTCTGGTGCTTTATCCTGAATATGTTTCAGGAGTAGATGCAAAAGTGGAGTCTAGAGCTCATGGAGTACGAAAGCTTCTTGCTGAAAAAATTCCTGTTCGACTTGCCCTGCCACCTTTGTTAAAATTATACCCAGCTGCCATTGAGGCTGGGGATAAAAGCTTAACAATTGTATTTGATATGTTGGGAACCATAATTGGTACAATGGACAGATCATCTATTGTGGCATTCCATGGAAAGGTATTTGACCTTTGTTTGGTTGCTCTTGATCTGCGCCGTCAAAGTCCTCCTTCAGTTCAAAACATTGATGTAGTGGAAAAAGCTGTGCTTAACACAATGACTGTTCTGACCCTAAAACTTACTGAGAGCATGTTCAAGCCTCTTCTCATAAAGAGTATTGAGTGGGCAGAATCTGAAGTGGATGAAACTGCCTCTAGCGGAAGCATTGATAGGGTCATATCGTTCTATGGCATGGTAAATAAGCTTACAGAGAGCCATCGGTCATTGTTTGTTCCTTACTTCAAACACTTGCTTGGTAGTTGTGTTCATCATCTTAGTGAAGGTGGAGATGTGAAAGTGTCTAGAGTGAATCAGAAGAAAAAGGCCAGGATTCTGGATGATGGCAATATAAAAGAAATAGGCAGTGTGTCTATCAATGCCTGGCATCTCAGGGCACTAGTCTTGTCATCCTTACATAAGTGTTTCCTGTACGACACTGGGACCTTGAAGTTTCTTGACTCCTCAAATTTTCAGATGTTGTTGAGACCTATTGTTTCACAACTTGTTGTAGATCCACCAGCACTGTTGGATGACAGCATTAATATACCAAGTGTGAAGGAAGTTGATGACCTACTGGTTGTATGCATTGGTCAAATGGCAGTGACTGCTGGATCAGACCTTTTGTGGAAACCTTTGAATCATGAGGTTTTGATGCAGACACGGAGTGAAAAATTGCGAGCTAAAATATTGGGCCTCAGAATTGTTAAATATTTTGTGGAGAACTTGAAAGAAGAATATCTAGTGTTCATAGCTGAAACAATCCCCTTCCTCGGTGAACTGCTTGAGGATGTGGAGCTTTCAGTTAAATCTCTTGCTCAGGAAATTCTGCAGGAAATGGAATCTCTGAGTGGAGAAAGCCTTCGCCAATACCTATGA

Predicted protein sequences of Glyma02g45960

Limit To All Plant Sequences

>Glyma02g45960.2   sequence type=predicted peptide   gene model=Glyma02g45960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIASQLEAIRSFAKTDSDPLKRPYTRPSILYDPKKAADISTETIFTEALRGLEILIGMDERFRNYKNDLFSHRSIELDRELMGIEQNNQLNVSIASYLRLLSGYFLHTSALQTLEYLIRRHKIHVYNNEDLILCTLPYHDEPEFVRIVQILDTRNTKWGFLDGVKASGARLPRMVIVQQCIRDKGILDALCNYASPSKKSRPSMPAIRFCTAVFVEVLGTVVTVDDDLVKRILPFVSLQPGIKGVSDHKAGSLMIIGLLGNKTALAPKLLNSLIRLVAEVARQEATELTDLHWFRLSLITLISLVQSQNVEILPMKALEILKEIRDLAGVLLELSEEFNIEKFLLVLLDSLIDCSSSDEYCQRTLLSLIEKVPINGLVYHVVTKILSTCVKLSQKVSDSTSSVSAGWAKKILFVVNTKYPSELRGAAHHFLQDNKARSKKDDSLYKVLCKMLDGNSDSSLDISDSNVWLGLYHPKADVRRATLLDLNNSVILKAKAVGLENLINIQEDILRQLEDKDLTVVQAALRVDGLPNVIDSSKLLDALQKVLRRCTDKLLSGSADNYSLNGEVAVTCLKNAISYFSDHTDYLKNVAAMIFPLLLVLPQTQSLNLKALGLVNKINWPLYQNIVVSSFGEGTLIPGSLSSINLKTIDNMAKNFMVHPKEHIAWFVESCSDLELSKTLFFFVLLQSLLIKPKDEDIYTLFECVFPILKAEWETSVTAGDASLDEFKPEVLDWDCSAFFNELLYVKLRHLNVKVMICIFWRLAQLISVLPSDILLHDDDKWVNKIRDLFVFFASSKLKHTFREHLHYLAAQCRISPPRLLSKFFTDEGVTAAIQVESLQCYAFLCSLSQDKWQIELLAEFPSVLVPFASDNQSIRVAAMSCIDSLRTLWCHVERSGKKNGNNATWIHFLGDVLALMDQQKTFILSDKKFLPSLFASAFRSSCPNILEPRNILVPQDIEKRFDQPTKIKILGFILGSTLKFSNYGKLMILSLFKGIGNALMHIPEVGPLLSSFLEQYYDELNKSCPKLSNTETQIVCLLLESCVMSSPSGGNDLQNLLLKALRLGAMTSDDPACVKPCITVLNKLNSQFYMELKNEVKEGLFCELVFLWHNDNGDVQRATKEALMRIDISFSTVGHMLDLILAQKSCISSSAEEKMVKKQKFIGHQEAGYPPNDISRRDNPVYILSSLLDVLLLKKDITNRHLLLGPLFKLLSKVFSGEWVNGAYSPVRRLSQPSSPSEANNYTIYHIQQTLLIILEDIIISLKSMAPLNEKIISEINIKLLIECARKSPVAVTRNHVFSVLSAVTRVFPGEVLEHMLDILEVIGQAAVTQIDSHSKHVFEDLISAIVPCWLAKTDDVEKLLMIFMDILPEIVEHRRLSFVLYLLRTLGEGKSLASLLILLLRSLISRKAACFLNVKTRDDLTFYTGEWEYKFAVQICEQYTSMIWLPSLVMLLEQRGNSDVDQALFLELFIVMQFSLQKLQDPEFVFKLESGEDTAVIQRALGELMEQVVLLLQLVDARKKQLNFPVILRRELKETMRAVVRNLTTVMIPVIYFRSIIKLLRHADKNVGKKALGLLCEVARNHKNVSLKLKGNKGSRSTPSFLLLHMNETSQESLNKLCLEIIRVLDDSSNTSLKVAAVSALEVLAERFPSNNSIFSLCLGSVTRHIVSHNLAVTSSCLRTTAALINVLGPKSLAELPKIMDNVMKSSRRVLASLDKKPETTDVLSASNESHFYVLITLEAVVDKLGGFLNPYLTNIMELLVLYPEYVSGVDAKVESRAHGVRKLLAEKIPVRLALPPLLKLYPAAIEAGDKSLTIVFDMLGTIIGTMDRSSIVAFHGKVFDLCLVALDLRRQSPPSVQNIDVVEKAVLNTMTVLTLKLTESMFKPLLIKSIEWAESEVDETASSGSIDRVISFYGMVNKLTESHRSLFVPYFKHLLGSCVHHLSEGGDVKVSRVNQKKKARILDDGNIKEIGSVSINAWHLRALVLSSLHKCFLYDTGTLKFLDSSNFQMLLRPIVSQLVVDPPALLDDSINIPSVKEVDDLLVVCIGQMAVTAGSDLLWKPLNHEVLMQTRSEKLRAKILGLRIVKYFVENLKEEYLVFIAETIPFLGELLEDVELSVKSLAQEILQEMESLSGESLRQYL*

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