Glyma02g45950 - SoyBase

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Report for Sequence Feature Glyma02g45950

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50049577
stop:	50052608
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20500	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 18 \| chr3:7157926-7160244 FORWARD LENGTH=437	SoyBase	E_val: 0	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G0T428	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phytase n=1 Tax=Glycine max RepID=G0T428_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G0T428	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytase n=1 Tax=Glycine max RepID=G0T428_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g45950

Locus	Gene Symbol	Protein Name
	PAP2	Purple acid phosphatase 2 gene
	PAP2	Purple acid phosphatase gene 2

Expression Patterns of Glyma02g45950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45950

Paralog	Evidence	Comments
Glyma14g02790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g290100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g45950

Limit To All Plant Sequences

>Glyma02g45950.1   sequence type=CDS   gene model=Glyma02g45950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTCAAACAACAAAAACTCCTTCTTGTTCTGATTCTAACGCTTCTTTTTGCCACTGCCACGCCTGATTCTGAATACGTTCGACCTCTTCCTCGTAAAACCTTAACAACCATCCCATGGGATTCAATTTCCAAGGCCCACTCCTCTTACCCTCAACAGGTACACATTTCTTTGGCAGGAGACAAGCACATGAGAGTTACATGGATAACCGATGATAAACATTCACCTTCATATGTAGAATACGGAACATTACCTGGGAGATATGACTCAATAGCTGAAGGAGAGTGCACCTCTTATAACTATCTGCTATATAGCTCAGGAAAGATACATCACGCTGTAATTGGACCTTTGGAAGACAATACTGTGTACTTTTACAGGTGTGGTGGAAAAGGTGCCGAGTTCGAGCTCAAAACTCCTCCAGCTCAATTTCCAATTACTTTTGCTGTGGCTGGGGATCTGGGTCAAACTGGTTGGACTAAATCAACACTGGCTCACATTGATCAATGTAAATATGATGTCTACCTGCTACCAGGAGACCTTTCATATGCTGATTGTATGCAGCATCTGTGGGACAATTTTGGGAAACTTGTGGAGCCGTTTGCGAGTACAAGGCCATGGATGGTAACTGAGGGAAACCATGAAGAGGAGAACATACTATTGTTAACGGATGAGTTTGTGTCCTATAATTCCAGATGGAAAATGCCATTTGAGGAAAGTGGATCAACTTCAAATCTCTATTATTCTTTTGAAGTTGCAGGTGTTCACGTTATAATGCTTGGCTCCTATGCAGATTATGATGTGTACTCTGAACAATACAGATGGCTAAAGGAAGATCTGTCAAAGGTGGATAGGAAAAGGACACCTTGGCTGCTTGTGTTATTTCATGTGCCATGGTATAATAGTAACAAGGCTCATCAAGGTGCAGGAGATGATATGATGGCAGCTATGGAGCCGTTGCTTTATGCTGCTAGTGTTGATTTAGTTATCGCTGGTCATGTTCACGCTTATGAACGTTCAAAACGTTTGTATAATGGAAGATTGGATCCCTGTGGTGCTGTCCATATAACTATTGGTGATGGAGGAAACAGAGAAGGCTTAGCTCATAAGTATATAAACCCGCAGCCAAAGTGGTCAGAATTCCGTGAAGCCAGTTTTGGTCATGGTGAGCTGAAGATTGTAAACTCCACTCATGCCTTCTGGAGTTGGCATAGGAATGATGATGATGAACCAGTAAAAGCTGATGATATCTGGATAACCTCTTTGGTCAGCTCACGCTGCGTTGATCAGAAGACACATGAACTCAGAAGTACACTTACTATGCCCGAAAACTCAGAACTTCGTGGATTAGCAAAAGTTATGTAA

Predicted protein sequences of Glyma02g45950

Limit To All Plant Sequences

>Glyma02g45950.1   sequence type=predicted peptide   gene model=Glyma02g45950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKQQKLLLVLILTLLFATATPDSEYVRPLPRKTLTTIPWDSISKAHSSYPQQVHISLAGDKHMRVTWITDDKHSPSYVEYGTLPGRYDSIAEGECTSYNYLLYSSGKIHHAVIGPLEDNTVYFYRCGGKGAEFELKTPPAQFPITFAVAGDLGQTGWTKSTLAHIDQCKYDVYLLPGDLSYADCMQHLWDNFGKLVEPFASTRPWMVTEGNHEEENILLLTDEFVSYNSRWKMPFEESGSTSNLYYSFEVAGVHVIMLGSYADYDVYSEQYRWLKEDLSKVDRKRTPWLLVLFHVPWYNSNKAHQGAGDDMMAAMEPLLYAASVDLVIAGHVHAYERSKRLYNGRLDPCGAVHITIGDGGNREGLAHKYINPQPKWSEFREASFGHGELKIVNSTHAFWSWHRNDDDEPVKADDIWITSLVSSRCVDQKTHELRSTLTMPENSELRGLAKVM*

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