Glyma02g45910 - SoyBase

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Report for Sequence Feature Glyma02g45910

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50011368
stop:	50020406
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50840	AT	Annotation by Michelle Graham. TAIR10: polymerase gamma 2 \| chr1:18839277-18844313 FORWARD LENGTH=1050	SoyBase	E_val: 0	ISS
GO:0006139	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006264	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial DNA replication	SoyBase	N/A	ISS
GO:0033259	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid DNA replication	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
GO:0008408	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity	SoyBase	N/A	ISS
PTHR10133	Panther	DNA POLYMERASE I	JGI		ISS
PF00476	PFAM	DNA polymerase family A	JGI		ISS
PF01612	PFAM	3'-5' exonuclease	JGI		ISS
UniRef100_G7K3G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Medicago truncatula RepID=G7K3G7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JJ76	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJ76_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g45910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45910

Paralog	Evidence	Comments
Glyma14g02860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g289700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g45910

Limit To All Plant Sequences

>Glyma02g45910.1   sequence type=CDS   gene model=Glyma02g45910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTCTCTGCTTTAAGGCCACACTGCCCTTTATGCCGCCGCTGCTTCTCAAGTCCCTTCTCTCTTCCTTCCCTTTTACCTTCTCAGCCTCTCCAACGAAGAAAAATGCAGTCATTCCAAATTTCGTACAATGGCCTCCGTAACAGCACTGTTCTTAGAAATTTTGTACAATCTAGAGCAGATTTCTCATGCTGTCTGAAGGGCACATCTGTGGGGTTAAATAAATACAATGGCGCGAGGTATAAGCGTAATTTTCTGTGCAAGAGTCCAGTTTGCATTTCATCTATGAAAATTTCAAATGCATCAACTGGCACGTTGGAGGAAATGACGGAGGAGGAAGAGCTGAACTCTTTGCGTCCGTGTGAAATGCAAGTTAGGACAGTGGGCATGGCTGCTTGCAACAATGAATTTTCCACAACCACTTTAGGAAAAAAATTGTCCGGTGGTGATTATAGAGGCTGGACTATGGCAAAAGATAAGTTAACTGAAAATAAAAAGGAAATGAATGGCTCAAATAAATTTGAGAGGGAAAATGGCAGTTTTTCTGCATCTAATGGAATTGCTTCCATTGCTCAGAACCAGGCTGTTCCTAGGAACGGGGATAGCATTATTGTACTGCAGGATCCTGGTACACATGCCCCATCTTCTGTTAACTATTCTGTATTAAACAATTCAAAGGTGTTAACAGATTCTGAAAAGGTGATTCACCAGTATAACGGATCTTCTTTGGGGATTGGTAAAGAGAAAGTCATTGTAGTCAATGGTGATCATGGTTTGGATGAAACTGCAAAGGATTCAACTAATGCAACACTTACTAAACAGGCATGTGGTACCGACCAATCAAAGCTCCGGGATAGGCTTTGTAGTATATATGATGATATTCTGGTTGTTGATAATATTCCTCTTGCAGAGGAAGTTTCTAAGATGCTTACAACAAAGTACCGGCATCTTATTTATGCATGTGATACCGAGGTGGCCAAGATAGATGTCAAACAAGAAACTCCTGTAGATCATGGGGAGATAACATGCTTCAGCATTTATTGTGGTCCAGAAGCTGATTTTGGAGGTGGAAAGTCTTGTATCTGGGTAGATGTTCTTGATGGTGGAGGCAAAGAGATTTTAGAAAAATTTGCTGAATTTTTTAGTGACTCTTCCATCAAGAAGGTCTGGCATAATTATAGCTTTGACTGTCATGTTATAGAGAATTATGGATTCAAAGTTTCTGGATTTCATGCTGATACAATGCACATGGCACGATTATGGGATTCTTCAAGACATTTGGATGGGGGTTATTCTCTTGAAGGACTTACTGGTGACAGAAGGGTCATGTCTAGGGCTCAGCTGAACCATGAAAAGGATTTGACTGGTAAGGTGTCAATGAAAACTATATTTAGTAAGAAAAAATTGAAAAAGGATGGATCTGAGGGTAAAACAAGTATCATTGCTCCTGTTGAAGAGCTACAGAGAGAGGAGCGTATACCTTGGATATGCTATTCTGCCTTAGATGCTAGCAGCACTTTGAAGCTGTATGAGAGCCTAAAGAGCCATCTTTCAGACATGCCCTGGAAATTTGATGGCCTGCCAGTTTATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGACCATTTGGTGAGCTTCTAGTCATGATGGAATCTGAGGGAATGCTAGTTGATCGGGCTTATCTCGAAAGCATAGAAAAGGTGGCCAAAGCAGAGCAAGAGGTAGCTGTTAATAGATTCCGCAAATGGGCCACTAGGTATTGCCCTGATGCCCAATATATGAATGTGGGAAGTGATTCACAGTTGCGCCAGCTGCTTTTTGGTGGCATCGTGAACAGAAAGGACTCCAGTCAGACACTTCCAACTGAACGAATATTCAAAATTCCCAATGTTGATAATGTGATTGAAGAAGGCAAGAAGGCTCCAAAAAAATTTCGTGATATAAAGTTGACGAGCCTAGGTTATAACCTGGAGACTGAGATGTACACAGCAACTGGTTGGCCGTCAGTTAGTGGTGATGCTTTAAAGGCCCTGGCTGGAAGTATTTCCGCTGATTATGACTTTTTTGATGAGGATTGTAACTTGGATGATCTTGATGATGAAGATGAAAATCCTTCTCAAAGTCAAGTTGCATCTGTAAAAATTGATAAATCTGCATATGGGACAGCCTATGCAGCTTTTCCAACAGAGGAAGAAGGGAGAGAAGCCTGCCATGCAATTGCTGCTTTATGTCAAGTCTGTTCAATCAACTCTTTGATCTCCAACTTCATCCTTCCCCTGCAGGGACATAATATATCAGGAAAAGATCTCCGTGTTCATTGTTCCTTAAATATCAACACAGAGACTGGACGCTTGTCAGCAAGAAGGCCAAATCTGCAGAATCAACCTGCTCTGGAAAAGGACCGATACAAAATCCGTCAAGCATTCATTGCTGCACCTGGGAATTCTCTTATAGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACACCTCGCGGACTGTAAGAGCATGTTGGAAGCTTTTGAAGCTGGTGGAGATTTCCATTCAAGGACTGCAATGAATATGTACCCACATATTCGTGAAGCAGTTGAGAAAAAGGAAGTGCTTCTGGAGTGGCATCCTCAGCCTGGTGAAGATAAACCCCCTGTTCCTCTTTTGAAGGATGCCTTTGCTTCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGGGAAGACTCCTGTGGGGCTTTCCAAGGATTGGAAGGTTTCTGTGAAAGAAGCTAAGAAAACAGTTGACCTTTGGTACAATGATAGAAAAGAGGTTTTGCAATGGCAAGAGGAGCGTAAAAAGGAAGCTCGTGTGTTACATTGTGTTTACACATTGCTAGGGCGAGCTCGGCGGTTCCCTTTGATGGCCCAAGCTAACACCTATCAAAAAGGTCATATTGAGCGAGCTGCTATTAATACTCCAGTGCAGGGTAGTGCAGCTGATGTTGCCATGTGTGCTATGTTGCAAATTTCCAAGAATAAACGGTTGAAGGAGCTTGGGTGGAAGTTACTTCTACAGGTTCATGATGAAGTCATATTGGAAGGACCAACGGAATCGGCTGAGGTTGCGAAGTCCATAGTTGTTGAGTGCATGTCCAAACCCTTTAACGGCAAAAATATTCTTAAAGTTGACCTCTCTGTTGATGCCAAGTGTGCTCAAAACTGGTACTCTGGGAAATAG

Predicted protein sequences of Glyma02g45910

Limit To All Plant Sequences

>Glyma02g45910.1   sequence type=predicted peptide   gene model=Glyma02g45910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSALRPHCPLCRRCFSSPFSLPSLLPSQPLQRRKMQSFQISYNGLRNSTVLRNFVQSRADFSCCLKGTSVGLNKYNGARYKRNFLCKSPVCISSMKISNASTGTLEEMTEEEELNSLRPCEMQVRTVGMAACNNEFSTTTLGKKLSGGDYRGWTMAKDKLTENKKEMNGSNKFERENGSFSASNGIASIAQNQAVPRNGDSIIVLQDPGTHAPSSVNYSVLNNSKVLTDSEKVIHQYNGSSLGIGKEKVIVVNGDHGLDETAKDSTNATLTKQACGTDQSKLRDRLCSIYDDILVVDNIPLAEEVSKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEITCFSIYCGPEADFGGGKSCIWVDVLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLTGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQREERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGLPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKAEQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSSQTLPTERIFKIPNVDNVIEEGKKAPKKFRDIKLTSLGYNLETEMYTATGWPSVSGDALKALAGSISADYDFFDEDCNLDDLDDEDENPSQSQVASVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREAVEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEARVLHCVYTLLGRARRFPLMAQANTYQKGHIERAAINTPVQGSAADVAMCAMLQISKNKRLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVECMSKPFNGKNILKVDLSVDAKCAQNWYSGK*

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