Glyma02g45880 - SoyBase

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Report for Sequence Feature Glyma02g45880

Feature Type:	gene_model
Chromosome:	Gm02
Start:	50001842
stop:	50004988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47860	AT	Annotation by Michelle Graham. TAIR10: chloroplastic lipocalin \| chr3:17656778-17658269 REVERSE LENGTH=353	SoyBase	E_val: 3.00E-152	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
KOG4824	KOG	Apolipoprotein D/Lipocalin	JGI		ISS
PTHR11430	Panther	LIPOCALIN	JGI		ISS
PTHR11430:SF32	Panther	PROSTAGLANDIN-H2 D-ISOMERASE (LIPOCALIN-TYPE PROST	JGI		ISS
PF08212	PFAM	Lipocalin-like domain	JGI		ISS
UniRef100_I1JJ73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJ73_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q38JB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast lipocalin n=1 Tax=Glycine max RepID=Q38JB2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g45880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45880

Paralog	Evidence	Comments
Glyma14g02880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g289400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g45880

Limit To All Plant Sequences

>Glyma02g45880.1   sequence type=CDS   gene model=Glyma02g45880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAGGTTCTTCTACGAGCATCACCTCCTCCACCTCACTCTTCTTATCTGAGACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCGTTGGAAGTCCCAAGTAAGGTTCTGACAAAGCATGTCTTATCTGGGCTTGCTGCTTCCTTGATATTTATTTCTCCAGCAAATCAGACTATTGCAGCAGATCTATCTCGTGCACCAAATAATATATGCCAACTTGCCAGTGCCAGTGAGAACGCAGTTACTTCACCATTTGAGAATGAAAAAGGTTCAAATCTAATGATGATGAGAGGAATGACAGCCAAGGACTTTGACCCTGTAAGATATTCAGGAAGATGGTTCGAAGTTGCTTCACTTAAACGTGGATTTGCAGGACAAGGCCAAGAAGACTGTCATTGCACTCAGGGTGTATATACATTTGATAGGGAAGCACCATCTATCCAAGTTGATACCTTTTGTGTTCATGGAGGCCCTAATGGATTTATAACTGGAATTAGAGGAAGGGTTCAATGTCTTTCAGAAGAAGATTTGGGGAAAACTGAGACACAGCTAGAGAAGCAGGAAATGATCAAAGAAAAATGCTATCTCCGCTTTCCTACACTGCCATTCATTCCCAAGGAACCTTATGATGTGATTGCTACAGATTATGACAATTTTTCTCTTGTTTCAGGAGCTAAGGATCAAAGTTTTATTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAGTACAAGTCTTACCTTGCAAACTATGGATATGATCCTAGCAAAATTAAAGATACGCCTCAGGATTGTGAAGTAATGTCCAATAGTCAGTTGGCAGCTATGATGTCTATGTCTGGAATGCAGCAGGCACTTACAAACCAATTTCCTGATCTAGGACTCAACGCCCCTATTGAGCTTAATCCTTTCACAAGTGTATTTGACACTTTGAAGAAGCTTCTTGAGCTTTATTTTAAGCAGTAA

Predicted protein sequences of Glyma02g45880

Limit To All Plant Sequences

>Glyma02g45880.1   sequence type=predicted peptide   gene model=Glyma02g45880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEVLLRASPPPPHSSYLRQCRTVSGRTLVKCSLEVPSKVLTKHVLSGLAASLIFISPANQTIAADLSRAPNNICQLASASENAVTSPFENEKGSNLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDREAPSIQVDTFCVHGGPNGFITGIRGRVQCLSEEDLGKTETQLEKQEMIKEKCYLRFPTLPFIPKEPYDVIATDYDNFSLVSGAKDQSFIQIYSRTPNPGPEFIEKYKSYLANYGYDPSKIKDTPQDCEVMSNSQLAAMMSMSGMQQALTNQFPDLGLNAPIELNPFTSVFDTLKKLLELYFKQ*

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