SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55460 | AT | Annotation by Michelle Graham. TAIR10: DNA/RNA-binding protein Kin17, conserved region | chr1:20707567-20708802 FORWARD LENGTH=411 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2837 | KOG | Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing | JGI | ISS | |
| PTHR12805 | Panther | KIN/RTS2-LIKE ZINC FINGER-CONTAINING | JGI | ISS | |
| PF10357 | PFAM | Domain of Kin17 curved DNA-binding protein | JGI | ISS | |
| UniRef100_B7FK30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA/RNA-binding protein KIN17 n=1 Tax=Medicago truncatula RepID=B7FK30_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JJ66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJ66_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g45820 not represented in the dataset |
Glyma02g45820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g02960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g288800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45820.3 sequence type=transcript gene model=Glyma02g45820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATGGTGTTCCACCAAGCTATTTATAATTAAGCACAGCGTGAACGGGAAAACAAAACCCTTTCCTATCCCAATCGCTTTCTCAGTTTCTCTCCGTCATCAAATCTAGGGTTCCTGCAGTTGTAGTTGCCGTCACCACCGCGAGCGCCACCTCCAGAATAGTTGCCGCCAATTTCTGTCCAGATTCGTGATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGTACTTTTCTGGAGCACATGAAGCGCAGTCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGACAGACACCACATTCATATGAACTCTACTCAGTGGGCCACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCCGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGATGAAGAAAAGCAAGAGAAGGAGATCAGGAGACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATATGGAAGATGGAATCAAGATAGGATTTTCTCTTGGGTCAACATCAGCTAAACCTGTGGTCAAGGAAAAACATGACGCGTCAAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATAATGGAAGGAATCCCGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATCGGAAGGATTATTGGTTGCACGAGGGAATTGTTGTCAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCACGTGCTCAGAGTTGATCAGGCCGAGCTTGAAACTGTGATTCCACAAGTTGGGGGGCGTGTAAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGAGCTTATGATGGCAGAGTACTTAAATCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAGTGAGTTTGATGGAATTAATAACTCGATGGTTCTGTTTATCAGTATCTTATATTGGATACAATTCTTTTCTTGGTAATTTATATTTCTGACTATAATTGGGCCCCAAACGTGCAGAAAAAGATGGCATCATGTTGCAGGTGCAATTAGACTGCAGTTTTATTTTGTAATTCTGTGGCGAGTAAAGTTGAATTCTAATTCTTGCTCTTTGTTTTCTGTTACTTTGAATGAACTCTCTCCTCC
>Glyma02g45820.2 sequence type=CDS gene model=Glyma02g45820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGTACTTTTCTGGAGCACATGAAGCGCAGTCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGACAGACACCACATTCATATGAACTCTACTCAGTGGGCCACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCCGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGATGAAGAAAAGCAAGAGAAGGAGATCAGGAGACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATATGGAAGATGGAATCAAGATAGGATTTTCTCTTGGGTCAACATCAGCTAAACCTGTGGTCAAGGAAAAACATGACGCGTCAAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATAATGGAAGGAATCCCGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATCGGAAGGATTATTGGTTGCACGAGGGAATTGTTGTCAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCACGTGCTCAGAGTTGATCAGGCCGAGCTTGAAACTGTGATTCCACAAGTTGGGGGGCGTGTAAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGAGCTTATGATGGCAGAGTACTTAAATCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAG >Glyma02g45820.3 sequence type=CDS gene model=Glyma02g45820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAGTGCCGAGATGAGAATGGGTTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGTACTTTTCTGGAGCACATGAAGCGCAGTCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGACAGACACCACATTCATATGAACTCTACTCAGTGGGCCACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAATGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCCGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGTAGATGAAGAAAAGCAAGAGAAGGAGATCAGGAGACAGATTGAAAAGGCTGAGCAAATGATGCAGCCGCCTACTTCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTAAATATGGAAGATGGAATCAAGATAGGATTTTCTCTTGGGTCAACATCAGCTAAACCTGTGGTCAAGGAAAAACATGACGCGTCAAGGGTGGTGTTTGATGAGGGTGATGAAGAGAAATATAATGGAAGGAATCCCGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAGCTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAATCGGAAGGATTATTGGTTGCACGAGGGAATTGTTGTCAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCACGTGCTCAGAGTTGATCAGGCCGAGCTTGAAACTGTGATTCCACAAGTTGGGGGGCGTGTAAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGAGCTTATGATGGCAGAGTACTTAAATCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAG
>Glyma02g45820.2 sequence type=predicted peptide gene model=Glyma02g45820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVDEEKQEKEIRRQIEKAEQMMQPPTSEADQPSQVEPPRELNMEDGIKIGFSLGSTSAKPVVKEKHDASRVVFDEGDEEKYNGRNPGNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGAYDGRVLKSVEYEDICKVA* >Glyma02g45820.3 sequence type=predicted peptide gene model=Glyma02g45820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVDEEKQEKEIRRQIEKAEQMMQPPTSEADQPSQVEPPRELNMEDGIKIGFSLGSTSAKPVVKEKHDASRVVFDEGDEEKYNGRNPGNNLKRKESGGGKSALDEMMREEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGAYDGRVLKSVEYEDICKVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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