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Report for Sequence Feature Glyma02g45770

Feature Type:gene_model
Chromosome:Gm02
Start:49924391
stop:49929549
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g45770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58760AT Annotation by Michelle Graham. TAIR10: Integrin-linked protein kinase family | chr3:21728756-21731740 FORWARD LENGTH=471 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009966GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of signal transduction SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004712GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI ISS
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI ISS
PTHR23257:SF89Panther ANKYRIN-KINASE JGI ISS
PF00023PFAM Ankyrin repeat JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7K3E6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Medicago truncatula RepID=G7K3E6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JJ60UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JJ60_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g45770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45770
ParalogEvidenceComments
Glyma14g03040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g288300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g45770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g45770
>Glyma02g45770.1   sequence type=CDS   gene model=Glyma02g45770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATCAAGAAGCTCCAGCCTCGCTTCTCTCTCGGCCGCCAATCCTCCCTCGCGCCGGAGCGCGGCGGCTGCGGCGGCGACGCGTCGGAGGCGCTGGACCCGGCGGTCCGGTTGATGTATCTGGCCAACGAAGGCGACTCGGACGGTATTAAGGAGCTCTTGGACGCCGGGAGTGACGTCAATTTCACCGACATTGACGGCCGCACCGCGCTCCACGTCGCCGCCTGCCAGGGCCGCACCGACGTAGTTGGCTTGCTGCTCCGACGAGGCGCCGACGTCGATCCTCAAGACCGCTGGGGCAGCACCCCTCTAGTTGATGCAATGTACTACAAAAATCACGACGTTGTCAAGCTTTTGGAGAAACACGGTGCAAGACCCCCGATGGCTCCCATGCATGTGCAAAATGCTCGTGAAGTCCCGGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGCGTTTGCATAACAAAGGGAACTTTTCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGATAAAGTAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTCCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACAGCTGTAAAGTTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCATGAACATAAACCAGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAACAGTCAAAGAGGACAAACCCGTGACAAGCCTGGATACATCATGGCGTTATGTTGCTCCAGAGGTATATAAAAATGAGGAATACGACACAAAGGTGGATGTATTTTCATTTGCTTTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTTTATGAAAAGCCTGAAAATGAAGTTCCCAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGACTAAAACAGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGACCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAGAGGCGCTGGAAGGTTAGGGCTCCTGGATGCTTCCAGAACCTGGAGGTCATATTTAGGGGCAATCGCACAAATCCAAGTAGCCGATCATCTCGCTCTACGGCCAGATAA
Predicted protein sequences of Glyma02g45770
>Glyma02g45770.1   sequence type=predicted peptide   gene model=Glyma02g45770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIKKLQPRFSLGRQSSLAPERGGCGGDASEALDPAVRLMYLANEGDSDGIKELLDAGSDVNFTDIDGRTALHVAACQGRTDVVGLLLRRGADVDPQDRWGSTPLVDAMYYKNHDVVKLLEKHGARPPMAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEELFTDDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRAYLKRKGALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTSLDTSWRYVAPEVYKNEEYDTKVDVFSFALILQEMIEGCPPFYEKPENEVPKAYVENERPPFRASPKLYAYGLKQLIEECWDEKPYRRPTFRQIIGRLEDIYYHLAQKRRWKVRAPGCFQNLEVIFRGNRTNPSSRSSRSTAR*






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