SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42820 | AT | Annotation by Michelle Graham. TAIR10: HVA22-like protein F | chr2:17817460-17818301 REVERSE LENGTH=158 | SoyBase | E_val: 1.00E-57 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1725 | KOG | Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) | JGI | ISS | |
| PTHR12300 | Panther | HVA22-LIKE PROTEINS | JGI | ISS | |
| PTHR12300:SF11 | Panther | HVA22-LIKE PROTEIN | JGI | ISS | |
| PF03134 | PFAM | TB2/DP1, HVA22 family | JGI | ISS | |
| UniRef100_B7FNC9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein f n=1 Tax=Medicago truncatula RepID=B7FNC9_MEDTR | SoyBase | E_val: 5.00E-76 | ISS |
| UniRef100_UPI0002336F0E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336F0E related cluster n=1 Tax=unknown RepID=UPI0002336F0E | SoyBase | E_val: 3.00E-100 | ISS |
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Glyma02g45740 not represented in the dataset |
Glyma02g45740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g03090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g287900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45740.3 sequence type=transcript gene model=Glyma02g45740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTGTCTCTTTCCTCTCTTGAGAGAAAAATAAGACTTTTGGGTCATCCCACCAACCTTCCTTTCCTTTGATTTGCATGCATATCCACAATTAATACAACTCATATTCCTTCAAATCTCATACTAAAGCTTGAATTTTCCCACCTGGAAAGATCTGAGTATCGCAGTTTCTTCATCATGGGTGTCCTTGGAACAATGGTAAATATCACAGATACGCGTCAATGAGAGAAATTGAAAGTGTGATGATCAACAGTGGCTAACGTATTGGGTTTTATACTCCTTCATGACCCTCTTTGAGCTTTCCACTCATGAGATCCTTGCTTGGTTTCCCATTTGGGGATACCTGAAGCTTATGTTTTGCATCTGGTTGGTAATGCCAATGTTCAATGGAGCGGCTTACATAAATGAGAATTATGTGAGGCAATATATAAAGAATATTGGAAGAAGTTCCAATTATTCTGAGGAGTACAAGAAGGTCCTTCACATGATGACCTTCGATGCAAGGAAAGCAGTTGAACGCTATATCGGTAGATATGGCCCTGATGCCTTTGAGAGAGTAGTGAGAGCGGCTGAAAAAGAATCAAAGAAGAGCTGAGTTAATAGTGACTATATATTTGACCAAGTTGGAATGAACATTGTGAAATCGACACTTCTTTCTGTATATATTTCAACATGAAGGAGACGGAGTTTCAGAATTATTGTTTAATTAATTAAATCAAATGACGGCAATTATAAGATTCATTTATTTTATTTGTATCTTCCATGGTTTAAGAATG
>Glyma02g45740.2 sequence type=CDS gene model=Glyma02g45740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTCCTTGGAACAATGGTAAGACATTTGGACACAATAATAGGGCCTGTAGTGATGCTTCTTTATCCTCTTCAATGTGATGATCAACAGTGGCTAACGTATTGGGTTTTATACTCCTTCATGACCCTCTTTGAGCTTTCCACTCATGAGATCCTTGCTTGGTTTCCCATTTGGGGATACCTGAAGCTTATGTTTTGCATCTGGTTGGTAATGCCAATGTTCAATGGAGCGGCTTACATAAATGAGAATTATGTGAGGCAATATATAAAGAATATTGGAAGAAGTTCCAATTATTCTGAGGAGTACAAGAAGGTCCTTCACATGATGACCTTCGATGCAAGGAAAGCAGTTGAACGCTATATCGGTAGATATGGCCCTGATGCCTTTGAGAGAGTAGTGAGAGCGGCTGAAAAAGAATCAAAGAAGAGCTGA >Glyma02g45740.3 sequence type=CDS gene model=Glyma02g45740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCTCTTTGAGCTTTCCACTCATGAGATCCTTGCTTGGTTTCCCATTTGGGGATACCTGAAGCTTATGTTTTGCATCTGGTTGGTAATGCCAATGTTCAATGGAGCGGCTTACATAAATGAGAATTATGTGAGGCAATATATAAAGAATATTGGAAGAAGTTCCAATTATTCTGAGGAGTACAAGAAGGTCCTTCACATGATGACCTTCGATGCAAGGAAAGCAGTTGAACGCTATATCGGTAGATATGGCCCTGATGCCTTTGAGAGAGTAGTGAGAGCGGCTGAAAAAGAATCAAAGAAGAGCTGA
>Glyma02g45740.2 sequence type=predicted peptide gene model=Glyma02g45740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVLGTMVRHLDTIIGPVVMLLYPLQCDDQQWLTYWVLYSFMTLFELSTHEILAWFPIWGYLKLMFCIWLVMPMFNGAAYINENYVRQYIKNIGRSSNYSEEYKKVLHMMTFDARKAVERYIGRYGPDAFERVVRAAEKESKKS* >Glyma02g45740.3 sequence type=predicted peptide gene model=Glyma02g45740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLFELSTHEILAWFPIWGYLKLMFCIWLVMPMFNGAAYINENYVRQYIKNIGRSSNYSEEYKKVLHMMTFDARKAVERYIGRYGPDAFERVVRAAEKESKKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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