Glyma02g45700 - SoyBase

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Report for Sequence Feature Glyma02g45700

Feature Type:	gene_model
Chromosome:	Gm02
Start:	49858633
stop:	49860733
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g45700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58800	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:21748562-21749596 FORWARD LENGTH=344	SoyBase	E_val: 1.00E-133	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JJ54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JJ54_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q019U2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 05 (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q019U2_OSTTA	SoyBase	E_val: 7.00E-23	ISS

Expression Patterns of Glyma02g45700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g45700

Paralog	Evidence	Comments
Glyma14g03120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g45700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g287500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g45700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g45700

Limit To All Plant Sequences

>Glyma02g45700.2   sequence type=transcript   gene model=Glyma02g45700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAAGGTGAAGGTGGCTCATGGCTGAACGAACCAAGCATGCACATGATTTAGCTTTGTTGTCTTTGGTGCTTCTGTTGCAGAACAGAGAACATGCTACATGCAACGTCCGAGTGGGCCCTATAATGGCCCACTAAATAGTTAAGTGCTCCGTGTTTTAATGTTAGCCCAATATGAGTCTGAAAGGTGCGGGCTGGGACCCAAGATGGCAGGTGCGTCACAAATCGTATCTCAACCAGAATGCTTCTCAACTCCCAAGTCTCAAGTGTTAATGTATTTTGTTTTTTTTTTTTTAAAAAAAATTTATCAAGAAGGTAAGGGATGAACTTAGGATACGAAGGGGGTGAAAACAACAGTTCTCAAATCACAGCAATTCAGTAACCGACTAAAGTGCAAATCGTTTACCGCACACAACATTTCAGTGATTCACACAATGGAAATGGATTGTCGTTGCACCTAGAGATTCAATTCAACACTTCAGAGGTAGTGTCGATTTTGGAGTTTCTCCGCGTGATTTCATCGTGGATACAAACCAAAGCCATGGATTGGAGCACAGAATTGCGGGGTCTCTGTGTTTCTCATGTTTTTCACATTGATGCTAATGTTAGTGGTTTTCCTTTTAGTATTTCATTATGATAGTGATGGTGCTAATCCCAGTTTAGCTTATGATTATGAGCTTCCTAAACAAAAATGGAATAGCTCTGACTCGTTGGTGAGTTTGCATCCGAAAAAAGAGTTCCGGAATGGAACTGATTTGATATGGCAAGTGCCCGAATCACCTAAAGGTGTTCTCTTTCTGGCTCATGGATGCAATGGCAGGGCCATTAACTTCTGGGACAAGTCCCCTGAATGCCCTGATTGCATTGGTTTGCCTGAAGAGCGGTTGCTTGTACTCCATGGTCTTGCCCAAGGTTTTGCTGTTATTACTATTTCAAGTGCACAAAGATGTTGGACACTTGGTAAAGAAGTGATGGTTGTTAAAGACATTATAGAGTGGTGGATTGGTAGAAGGAAGCTTGAGAAGCTTCCTCTTGTGGCTTTGGGTGCTTCTTCTGGAGGGTATTTCGTGTCTGTGCTTGCCGCCGCCATGAAGTTTAGTAGTACTGTGCTCATGATTGCTGAGGGGATGTTTGAGCAAATTGATGTTAAAGGGGACTATCCGCCTACCCTTTTTGTTCACATGCCAAAAGATCTTTATAGGCAGCAGAAAATAGATGAATATGTGAAGGTTTTAAAAGATAAAGGGATTGATGTTGGTGTTGTTGAATGTATGGAGTTCCCGTTGTTGCCGAATACTTTAGCTGACAGAATTCCAGGGCTTGATCAGGCTCTTTCCAGGAAGTTATTTGAGTTCTTTCAGGAAAAGGGCTTTATTGATAAAAATGGTTATATGAAAAAAGATGGGCGTCAAATCAAATGGAAAAAGGCTCTTGAGGAGAAGAAAGCTCTTCTGCTGGATAAGAATCTGGTCCCTCACATCCAAGAGGAGCTAAACCTTGCATTTGCTTACCATGAGATGACTAGTGTGCATTCTGACCAAATTTTTAAATGGTTTGAATCTCACATGAGCTGATAAAAAATTACCTGCGTTGAAACCACTTGTATATGATGGACCTATCCTTCTCAATTTTCCTGAAATTCAATCCGAGATTTATTGACTCATGTAAAAACTTCTATAGTGGTTTCTTTATCAGAGGTTGAGTTGGAATTTCTTACCTAGGTGTTACTGTCAGAAGTTATCTATGTAAAAGGTATGCCTCTGAACCTTTTCACCAATACCATATGTGCTTTGGCAAGCAGTATGCTGTATGTTATCCTAGATTTTGTTAAAATTATAATCTTCCTACCGTTTTTCTTGAGATTCGAAGCAAAAATCATCGTTTAATCTTTGAAATTTGAATACCCTGGTGGACTTGCATTTCAAACCCTTTTTAATA

Coding sequences of Glyma02g45700

Limit To All Plant Sequences

>Glyma02g45700.1   sequence type=CDS   gene model=Glyma02g45700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGCGTGGATACAAACCAAAGCCATGGATTGGAGCACAGAATTGCGGGGTCTCTGTGTTTCTCATGTTTTTCACATTGATGCTAATGTTAGTGGTTTTCCTTTTAGTATTTCATTATGATAGTGATGGTGCTAATCCCAGTTTAGCTTATGATTATGAGCTTCCTAAACAAAAATGGAATAGCTCTGACTCGTTGGTGAGTTTGCATCCGAAAAAAGAGTTCCGGAATGGAACTGATTTGATATGGCAAGTGCCCGAATCACCTAAAGGTGTTCTCTTTCTGGCTCATGGATGCAATGGCAGGGCCATTAACTTCTGGGACAAGTCCCCTGAATGCCCTGATTGCATTGGTTTGCCTGAAGAGCGGTTGCTTGTACTCCATGGTCTTGCCCAAGGTTTTGCTGTTATTACTATTTCAAGTGCACAAAGATGTTGGACACTTGGTAAAGAAGTGATGGTTGTTAAAGACATTATAGAGTGGTGGATTGGTAGAAGGAAGCTTGAGAAGCTTCCTCTTGTGGCTTTGGGTGCTTCTTCTGGAGGGTATTTCGTGTCTGTGCTTGCCGCCGCCATGAAGTTTAGTAGTACTGTGCTCATGATTGCTGAGGGGATGTTTGAGCAAATTGATGTTAAAGGGGACTATCCGCCTACCCTTTTTGTTCACATGCCAAAAGATCTTTATAGGCAGCAGAAAATAGATGAATATGTGAAGGTTTTAAAAGATAAAGGGATTGATGTTGGTGTTGTTGAATGTATGGAGTTCCCGTTGTTGCCGAATACTTTAGCTGACAGAATTCCAGGGCTTGATCAGGCTCTTTCCAGGAAGTTATTTGAGTTCTTTCAGGAAAAGGGCTTTATTGATAAAAATGGTTATATGAAAAAAGATGGGCGTCAAATCAAATGGAAAAAGGCTCTTGAGGAGAAGAAAGCTCTTCTGCTGGATAAGAATCTGGTCCCTCACATCCAAGAGGAGCTAAACCTTGCATTTGCTTACCATGAGATGACTAGTGTGCATTCTGACCAAATTTTTAAATGGTTTGAATCTCACATGAGCTGA

>Glyma02g45700.2   sequence type=CDS   gene model=Glyma02g45700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTCACATTGATGCTAATGTTAGTGGTTTTCCTTTTAGTATTTCATTATGATAGTGATGGTGCTAATCCCAGTTTAGCTTATGATTATGAGCTTCCTAAACAAAAATGGAATAGCTCTGACTCGTTGGTGAGTTTGCATCCGAAAAAAGAGTTCCGGAATGGAACTGATTTGATATGGCAAGTGCCCGAATCACCTAAAGGTGTTCTCTTTCTGGCTCATGGATGCAATGGCAGGGCCATTAACTTCTGGGACAAGTCCCCTGAATGCCCTGATTGCATTGGTTTGCCTGAAGAGCGGTTGCTTGTACTCCATGGTCTTGCCCAAGGTTTTGCTGTTATTACTATTTCAAGTGCACAAAGATGTTGGACACTTGGTAAAGAAGTGATGGTTGTTAAAGACATTATAGAGTGGTGGATTGGTAGAAGGAAGCTTGAGAAGCTTCCTCTTGTGGCTTTGGGTGCTTCTTCTGGAGGGTATTTCGTGTCTGTGCTTGCCGCCGCCATGAAGTTTAGTAGTACTGTGCTCATGATTGCTGAGGGGATGTTTGAGCAAATTGATGTTAAAGGGGACTATCCGCCTACCCTTTTTGTTCACATGCCAAAAGATCTTTATAGGCAGCAGAAAATAGATGAATATGTGAAGGTTTTAAAAGATAAAGGGATTGATGTTGGTGTTGTTGAATGTATGGAGTTCCCGTTGTTGCCGAATACTTTAGCTGACAGAATTCCAGGGCTTGATCAGGCTCTTTCCAGGAAGTTATTTGAGTTCTTTCAGGAAAAGGGCTTTATTGATAAAAATGGTTATATGAAAAAAGATGGGCGTCAAATCAAATGGAAAAAGGCTCTTGAGGAGAAGAAAGCTCTTCTGCTGGATAAGAATCTGGTCCCTCACATCCAAGAGGAGCTAAACCTTGCATTTGCTTACCATGAGATGACTAGTGTGCATTCTGACCAAATTTTTAAATGGTTTGAATCTCACATGAGCTGA

Predicted protein sequences of Glyma02g45700

Limit To All Plant Sequences

>Glyma02g45700.1   sequence type=predicted peptide   gene model=Glyma02g45700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKRGYKPKPWIGAQNCGVSVFLMFFTLMLMLVVFLLVFHYDSDGANPSLAYDYELPKQKWNSSDSLVSLHPKKEFRNGTDLIWQVPESPKGVLFLAHGCNGRAINFWDKSPECPDCIGLPEERLLVLHGLAQGFAVITISSAQRCWTLGKEVMVVKDIIEWWIGRRKLEKLPLVALGASSGGYFVSVLAAAMKFSSTVLMIAEGMFEQIDVKGDYPPTLFVHMPKDLYRQQKIDEYVKVLKDKGIDVGVVECMEFPLLPNTLADRIPGLDQALSRKLFEFFQEKGFIDKNGYMKKDGRQIKWKKALEEKKALLLDKNLVPHIQEELNLAFAYHEMTSVHSDQIFKWFESHMS*

>Glyma02g45700.2   sequence type=predicted peptide   gene model=Glyma02g45700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFTLMLMLVVFLLVFHYDSDGANPSLAYDYELPKQKWNSSDSLVSLHPKKEFRNGTDLIWQVPESPKGVLFLAHGCNGRAINFWDKSPECPDCIGLPEERLLVLHGLAQGFAVITISSAQRCWTLGKEVMVVKDIIEWWIGRRKLEKLPLVALGASSGGYFVSVLAAAMKFSSTVLMIAEGMFEQIDVKGDYPPTLFVHMPKDLYRQQKIDEYVKVLKDKGIDVGVVECMEFPLLPNTLADRIPGLDQALSRKLFEFFQEKGFIDKNGYMKKDGRQIKWKKALEEKKALLLDKNLVPHIQEELNLAFAYHEMTSVHSDQIFKWFESHMS*

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