SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06510 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). | chr1:1992389-1993583 FORWARD LENGTH=277 | SoyBase | E_val: 5.00E-78 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JJ36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JJ36_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SHJ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F12K11.16 n=2 Tax=Arabidopsis thaliana RepID=Q9SHJ4_ARATH | SoyBase | E_val: 1.00E-74 | ISS |
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Glyma02g45520 not represented in the dataset |
Glyma02g45520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g03270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g285800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45520.1 sequence type=CDS gene model=Glyma02g45520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATATTGAACTGTGTCAGAGTGACAGCTATGCCTATGATGGCTGTTCCTAGGTGGAGATCCACCTGCTGCTGCGCTTCTTCTTCGTCTTCAGTTTCAACCATCAACACAGACCAACTTCGTTCTCAACTTGATCAACTTCATGCAGAAGCTGATGCCACCAGAACCAAGGCAACTAATGCTAGATTGAGGCTTCTGCGACTGTCAGAGGCTGCAGAGAAGCTTAAAAAACAAGCAGCTATAAGCATTCAAAAGGGGCAGGAAAATTATGCAAGGGAAATGCTTTTTCAGAGGAAGAAAGTGTTGCAGGCTTTAGACAAGTCTAAAAGACGCATTGAATTGCTCGATGAGCTTTCCACCAAGCTAAGTGAGGCAATATCTTTGAAAGAAAGTCAGCTAATTGGAAATGTTACTGTGAACATTGAAGACTCAACAGAAGATGCTTCAAGTCCAGTTCGAATTATTTCTCCAAAGGAGGAAGTTCAAAATGATGTCACTAAGGATGACTCAGATCCTGATACGATGGAATTTAGTGATATTCAGGATGTGCAACTTTCTATCGAAAGTGAAGGAAGTCCACTGGATGATAAGGAGACTCAGAATCTTCTGGAATCCCTTAGTATCAGCACTTCAAATGAAGAATATATAGCCAGAAACTTGTCAGAAATATCCTCTTATGAGGATTTCATGGAACATATAGATAAAAAACTCAGTGAAATTGAAGCCGAACTAGTTACTGTTTTGAATGTCTCAACCTTGGTACTGGATAATGAAGAGAGACCAAAGAATTCTAGGTTGCAACAAACAATTGAACTCCTTGAGAGCATCCATGGCATTAGACAGAGAATTAGAAGTACCAAGGAGGCAAAATTGAGGATCTAA
>Glyma02g45520.1 sequence type=predicted peptide gene model=Glyma02g45520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILNCVRVTAMPMMAVPRWRSTCCCASSSSSVSTINTDQLRSQLDQLHAEADATRTKATNARLRLLRLSEAAEKLKKQAAISIQKGQENYAREMLFQRKKVLQALDKSKRRIELLDELSTKLSEAISLKESQLIGNVTVNIEDSTEDASSPVRIISPKEEVQNDVTKDDSDPDTMEFSDIQDVQLSIESEGSPLDDKETQNLLESLSISTSNEEYIARNLSEISSYEDFMEHIDKKLSEIEAELVTVLNVSTLVLDNEERPKNSRLQQTIELLESIHGIRQRIRSTKEAKLRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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