SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18260 | AT | Annotation by Michelle Graham. TAIR10: Cytochrome b561/ferric reductase transmembrane protein family | chr4:10093524-10097337 REVERSE LENGTH=545 | SoyBase | E_val: 3.00E-48 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| PTHR23130 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR23130:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03188 | PFAM | Eukaryotic cytochrome b561 | JGI | ISS | |
| UniRef100_B9S130 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dopamine beta-monooxygenase, putative n=1 Tax=Ricinus communis RepID=B9S130_RICCO | SoyBase | E_val: 2.00E-47 | ISS |
| UniRef100_UPI0002336E0A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E0A related cluster n=1 Tax=unknown RepID=UPI0002336E0A | SoyBase | E_val: 3.00E-101 | ISS |
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Glyma02g45441 not represented in the dataset |
Glyma02g45441 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g03371 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g285000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45441.2 sequence type=transcript gene model=Glyma02g45441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTAAAAAGCTTGTGAAAGTTAACCCCACAACCACAAGTTTGAAATCTCATTTCATTATATATCCCCACACCCCACTTTCATAACCATCATTTTTCATGCAACAATCACTCCTATTAGCCCATTATATTCCAAGAGTTTCACTTTATGCTGAAATATATAATTAAGAAGGTTAAAAATCTATCTATTTTCGGCTCATTGATGAGTTCACTCTTGCTTCAAGTTGATATCATTGTCTCCTGATCTGGACTCAACTGTTTTGTTGTGCTATCTGAGAAGAAAGGTAAGAGTGCTATGAATCCTCAAGCACACATACAAATATAGTCATGTAAGTTACCTTAGCCAGCTTAAGGAGAAACACATAAAAATTTCAAAATCTCAATAGTTTTTCTGCCTTGAAGTCTTCTTCACTATCATTGAGGATAGAGTTTGGCATCAATCATCATCATATTTTCAACAAAAGAAGGAAGAATGGGAGATCAGCAAAAGCTCAGTGCTTTCCTCTTTCACGTAAGTATTGTTTTTGTCATGTTTCTCCTAGTTAGCGCCTCTCAAGAACACAAGAAAGCTAAAGGCGGACATTCAAGCAAAAAAGACCATAACATGAAGATGAGTTCTAGACTTCAGTTCGAAATCACATTACATGGGTTTCTCTTGTGGGCTTCAATGGCGTTCTTGATGCCTGTTGGTATACTAGTCATTAGACTGTCCAACAGAGATGAGAATCGAAGAAGACTTAGAATTATATTCTATGTTCATGCAGTTTTGCAGGAAACTTGCCGTACTTCTTGCCACTGCAGGAGCAATCATGTCCATAAAAAATTTCAACAACTCCTTCAACAATAATCATCAAAGATTAGGGGTAGCATTATATGGTATTATCTGGCTGCAAGTTCTAGTTGGTATTTTTCGACCACAAAGGGGATCCAAAAGAAGAAGTCTGTGGTTCTTTGCACACTGGATAATGGGAACTGCAGTGTCATTACTGGGTGTGCTGAATGTATTTATTGGCTTACAAGCCTACCAAGAAAAAACATCCAAAAGCATAACAACTTGGAATATACTTTTCACTGTTCAGATATCTTTGATTGTGATCTTCTACCTTCTTCAAGAAAAATGGGTCTACATAAAAAACCAAGGAGTGATTTGGGACAACTAACTACTGATTCCTACTTATCAAGAAAAAAGCTAGTTCAGAGGACAAGAATACAGGCACGAAGGCCGAGTCTTGCTGAGAAAGATTAACCAATGCAATGCCTTGCCATGGATGCAAGTATTTGAAACACTGATGGACCTGAATTTCTTTCCCTGAGATAAAATATGTTTGTGTTGGTTTCTTTTTTCATAGAAGGTACAGTCATTGAAAACTTTGTAATATCTTCCCGCGAGACACATTTTTTGTTGTATTCTTATTT
>Glyma02g45441.1 sequence type=CDS gene model=Glyma02g45441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGATCAGCAAAAGCTCAGTGCTTTCCTCTTTCACGTAAGTATTGTTTTTGTCATGTTTCTCCTAGTTAGCGCCTCTCAAGAACACAAGAAAGCTAAAGGCGGACATTCAAGCAAAAAAGACCATAACATGAAGCTTGCCGTACTTCTTGCCACTGCAGGAGCAATCATGTCCATAAAAAATTTCAACAACTCCTTCAACAATAATCATCAAAGATTAGGGGTAGCATTATATGGTATTATCTGGCTGCAAGTTCTAGTTGGTATTTTTCGACCACAAAGGGGATCCAAAAGAAGAAGTCTGTGGTTCTTTGCACACTGGATAATGGGAACTGCAGTGTCATTACTGGGTGTGCTGAATGTATTTATTGGCTTACAAGCCTACCAAGAAAAAACATCCAAAAGCATAACAACTTGGAATATACTTTTCACTGTTCAGATATCTTTGATTGTGATCTTCTACCTTCTTCAAGAAAAATGGGTCTACATAAAAAACCAAGGAGTGATTTGGGACAACTAA >Glyma02g45441.2 sequence type=CDS gene model=Glyma02g45441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAATCGAAGAAGACTTAGAATTATATTCTATGTTCATGCAGTTTTGCAGGAAACTTGCCGTACTTCTTGCCACTGCAGGAGCAATCATGTCCATAAAAAATTTCAACAACTCCTTCAACAATAATCATCAAAGATTAGGGGTAGCATTATATGGTATTATCTGGCTGCAAGTTCTAGTTGGTATTTTTCGACCACAAAGGGGATCCAAAAGAAGAAGTCTGTGGTTCTTTGCACACTGGATAATGGGAACTGCAGTGTCATTACTGGGTGTGCTGAATGTATTTATTGGCTTACAAGCCTACCAAGAAAAAACATCCAAAAGCATAACAACTTGGAATATACTTTTCACTGTTCAGATATCTTTGATTGTGATCTTCTACCTTCTTCAAGAAAAATGGGTCTACATAAAAAACCAAGGAGTGATTTGGGACAACTAA
>Glyma02g45441.1 sequence type=predicted peptide gene model=Glyma02g45441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDQQKLSAFLFHVSIVFVMFLLVSASQEHKKAKGGHSSKKDHNMKLAVLLATAGAIMSIKNFNNSFNNNHQRLGVALYGIIWLQVLVGIFRPQRGSKRRSLWFFAHWIMGTAVSLLGVLNVFIGLQAYQEKTSKSITTWNILFTVQISLIVIFYLLQEKWVYIKNQGVIWDN* >Glyma02g45441.2 sequence type=predicted peptide gene model=Glyma02g45441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRIEEDLELYSMFMQFCRKLAVLLATAGAIMSIKNFNNSFNNNHQRLGVALYGIIWLQVLVGIFRPQRGSKRRSLWFFAHWIMGTAVSLLGVLNVFIGLQAYQEKTSKSITTWNILFTVQISLIVIFYLLQEKWVYIKNQGVIWDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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