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Report for Sequence Feature Glyma02g45344

Feature Type:gene_model
Chromosome:Gm02
Start:49635251
stop:49636270
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g45344
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72920AT Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain family protein | chr1:27437947-27438868 FORWARD LENGTH=275 SoyBaseE_val: 5.00E-26ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PF01582PFAM TIR domain JGI ISS
UniRef100_G7K3B3UniRef Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7K3B3_MEDTR SoyBaseE_val: 2.00E-32ISS
UniRef100_UPI0002336E04UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336E04 related cluster n=1 Tax=unknown RepID=UPI0002336E04 SoyBaseE_val: 3.00E-60ISS

Expression Patterns of Glyma02g45344
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g45344 not represented in the dataset
Glyma02g45344 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g45344 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g284000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g45344
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g45344
>Glyma02g45344.1   sequence type=CDS   gene model=Glyma02g45344   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAACATGAGGAAGAGTCCCTTGGTTTCACCTATGATGTTTTCCTCTGTTTTAGAGGCGAAGATGTAAGGTACTTATTTATAGGACATCTTCGTAAAGAGTTGTGCAGCAAGAATATAAACACTTTCTGTGATGATGAGGACCTGAGGATGGGAGAAGGTATTGCACCTTCTCTATCCAAGGCCATTGAAGAATCTAAGATTTTAATCATTGTGTTTTCTGAGAACTACGCATCGCCCCCATGGTGCCTTGATGAACTTGTTAAGATCCTAGAAAGTGCAGGCTTGGAGCTAATTAATTAG
Predicted protein sequences of Glyma02g45344
>Glyma02g45344.1   sequence type=predicted peptide   gene model=Glyma02g45344   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKHEEESLGFTYDVFLCFRGEDVRYLFIGHLRKELCSKNINTFCDDEDLRMGEGIAPSLSKAIEESKILIIVFSENYASPPWCLDELVKILESAGLELIN*






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