SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30800 | AT | Annotation by Michelle Graham. TAIR10: helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0926 | KOG | DEAH-box RNA helicase | JGI | ISS | |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | ISS | |
| PTHR18934:SF68 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF01424 | PFAM | R3H domain | JGI | ISS | |
| PF04408 | PFAM | Helicase associated domain (HA2) | JGI | ISS | |
| PF07717 | PFAM | Domain of unknown function (DUF1605) | JGI | ISS | |
| UniRef100_G7KD14 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase A-like protein n=1 Tax=Medicago truncatula RepID=G7KD14_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336E02 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E02 related cluster n=1 Tax=unknown RepID=UPI0002336E02 | SoyBase | E_val: 0 | ISS |
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Glyma02g45220 not represented in the dataset |
Glyma02g45220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g03542 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g282700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45220.2 sequence type=CDS gene model=Glyma02g45220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAACGACGACGAAGAACAAAAGAGAGAAGAAGAAAGGAGAGCCACTTTTCCGTCAAAACCCCAACGTTGATGAAGTCACCAGGATTCGCATTTCCCAGATTCTAGAACACTTCCGAGCTTCCAATGATGAAGTCTACAAGTTTGATGCTGATTTGTCCAACCAAGAGCGTGCTTTGGTGCATCAAATGGCCCTCAAAATGGGGTTTAGATCTAAAAGTTACGGGCTAGGGAAGGAAAGGAGAGTGTGTGTTCAAAAAATGAAAAAGAAGGTTGACACGGATAACGGGTTTGGAAGTCTTCCTCAATTCACATTTTCTGGAGAGGCAAAGTGGGTGCTGGGTGATTTGTTTGCTCATTATCCGCCTGGCGATGGAAACTCATGGGAGATGGTCGGAGAAAATAGTGACACTGCTACTGACAGAACAAAACAGAGGCCGGATGATATTTTCAGCAGGCCCTCTATGACCAAAGCTGAAATTGCTAGGAGATTGGAAGCTCTTACTTCTAGAATGAACAATGTCTCTAACTTGAAACAGATCATTGAAGGGAGATCTAAGCTTCCAATTGTGTCTTACAAGGATTCAATTACATCAACTGTTGAATCTCACCAGGTTGTTCTAATATCTGGTGAGACTGGTTGTGGAAAGACCACGCAGGTCCCACAATTTATTTTGGATCATATGTGGGGTAAGGGAGAGGTATGTAAAATAGTTTGCACTCAGCCTCGGCGGATCTCTGCAACTTCAGTTTCCGAGAGAATTGCTAGTGAGAGAGGAGAGACTATTGGAGAAAATGTGGGATATAAGATACGGTTAGAAAGCAGAGGTGGAAGGCAATCATCAATTGTGCTATGTACTACTGGAGTGCTATTAAGGGTGCTGGTTTCCAAAGGTTCTCATTCGTCAAAGATTGGGCGTGTGAAGGATGAGATTTCTGGCATCACTCACATAATTATGGATGAAATTCATGAAAGGGATCGATACTCAGACTTCATGTTGGCAATCATCAGAGACATGCTCCCTTTATATCCTCACCTATGTCTGATATTAATGAGTGCTACCATTGATGCTGCTAGATTTTCTCAATATTTTGGGGGCTGCCCAATCATCCATGTTCCGGGCTTCACATATCCGGTCAAAACTTTCTATTTGGAGGATGTACTTTCTATTGTAAAATCCAGGCCTGATAATCATCTTGATAGTACCACATGTAGTATTCCAAAAACCACTTGTGAGCTAAGTGAAGAAGAGAAGCTTTCCATTGATGAAGCTATTAATTTGGCTTGGTCTAATGATGAGTGGGACCTGCTGTTAGAATTGGTTTCTTCGGAAGGAACCCCAGATCTATTTCATTACCAACATTCTTTAACTGGCCTTACTCCATTAATGGTGTTTGCTGGAAAAGGTAGAGTGGGTGATATGTGCATGCTCTTATCTTGTGGGGCAGATTGCCATTTAAGGGCCAAAGATGGAATGACTGCATTGGAGATTGCTGAAAGGGAAAACCAACCAGAAGCAGCCGAAATATTGAAGAAGCACATGGATAATGATTTTTCCAACTCCATAGAAGAGAAGAAATTACTTGATAAATACCTGGCAACAGTCAACCCAGAACTTGTTGATGATGTTTTGATAGAGCAGCTGATAAGAAAAATATGTATTGATTCAACAGATGGAGGGATCCTTGTTTTTCTTCCGGGCTGGGATGATATAAATAGAACACGTGAGAGATTGCTTGCATCACCTTTTTTCAAGAATTCCTCAATGTTTATGCTCATATCTCTGCATTCAATGGTTCCAAGCATGGAACAAAAGAAGGTTTTTAGGCACCCACCTCATGGTTGTCGCAAAATTGTACTATCTACCAATATTGCTGAAACAGCTATCACCATTGATGATATAGTGTATGTCATAGACACCGGACGAATGAAGGAAAAAAGTTATGATCCTTATAACAATGTGTCAACTCTTCAGTCATCTTGGATTTCAAAAGCAAGTGCTAAGCAGCGAGAGGGACGTGCTGGCCGTTGTCAACCTGGTATATGCTATCATCTATATTCAAGGACTCGAGCAGCTTCCTTGCCAGATTTTCAGATTCCGGAAATTAGGAGAATGCCTATTGAGGAGCTTTGTCTGCAGGTAAAGTTGCTTGATCCAAGTTGCAAAGTAGAAGAATTTCTACGCAAGACATTAGATCCTCCAGTTTTTGAGTCCATAAGCAATGCTATTTTAGTTCTTCAAGATATTGGGGCTTTTTCAAATGATGAAAAACTCACCCATCTAGGGGAGAAGCTTGGTTCTCTTCCTGTTCACCCATTAATATGCAGGATGCTTTTTTTTGCTATATTGATGAACTGCCTTGATCCAGCTTTAACTCTTGCATGCGCATCTGATTATAGAGATCCATTTACACTTCCAATGTTACCTGAAGAAAAGAAGAGAGCTTCAGCTGCCAAATCTGAGCTTGCTTCTTTATATGGGGGTTGTAGTGATCAGTTTGCCGTATTGGCTGCATTTGAATGCTGGAATAATGCAAAGAAAATGGGTCTAGAAGCACGGTTTTGTTCTCAGTATTTTGTGTCTTCAAGCGCCATGAATATGTTATCAGGCATGCGCAGGCAACTCCAAGCAGAATTAATTCGAATTGGGTTTATTCATGAAGACGTGTCAGGTTACAGTGTGAATACACATGACCCTGGTGTGCTCCATGCGGTTTTGGTAGCAGGTTTGTATCCAAGGGTTGGGAGATTTCTAACAAATAAAGGTGGAAAAAGGGTTATAGTTGAAACAACAAGTGGAGATAAAGTTCGCCTGCACAATCATTCCACAAATTTTAAGTTGTCATTCAAGAAAAATTTAGATAACACTTTAATTGTGTACGATGAGATTACTCGCGGTGACGGGGGTATGAACATAAGGAACTGCACAGTTGTTGGACCACTTCCACTTTTGCTGCTTTCAACTGAGATTGCCGTTGCTCCAGCAGAAGAAAATGACGAGGGGGATGTGGATGATGCAGTAGGTAGTGAAGATGAAGCTGGAAGTGAAGATGGGATGGAGTTTGATGCCGAGTCCAGTGGAGGCCGTGAGGATAAGTTGATGTCTTCTCCTGATAATATGGTTAAAGTAATCATGGACCGTTGGCTTTATTTTCGTTCAACAGCAATTGATGTTGCTCAGCTATACTGCTTGAGAGAGCGATTATCAGCAGCAATTTTATACAAAGTCACACATCCAAGGAATACACTTCCTCCCATCATGGCGGCATCTGTGCATGCTATAGCTTGTATTCTGTCATGTGATGGGTGCATTGGTGTGTCAGCAATGTTAGAAGGTGTGGACACACTAACCACTATGGTAAACGCAACGTCTTTGGGCAAGCCAGCAACAGGTACTAGGCGTTTTGGTAAGAGACCAAAAGGATCCCTTGCAGAGCTTTTAAATTACGACGGGCGCCAAAACTCTGGGCCTCATTTCAAAGCATAG
>Glyma02g45220.2 sequence type=predicted peptide gene model=Glyma02g45220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METTTKNKREKKKGEPLFRQNPNVDEVTRIRISQILEHFRASNDEVYKFDADLSNQERALVHQMALKMGFRSKSYGLGKERRVCVQKMKKKVDTDNGFGSLPQFTFSGEAKWVLGDLFAHYPPGDGNSWEMVGENSDTATDRTKQRPDDIFSRPSMTKAEIARRLEALTSRMNNVSNLKQIIEGRSKLPIVSYKDSITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQPRRISATSVSERIASERGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGSHSSKIGRVKDEISGITHIIMDEIHERDRYSDFMLAIIRDMLPLYPHLCLILMSATIDAARFSQYFGGCPIIHVPGFTYPVKTFYLEDVLSIVKSRPDNHLDSTTCSIPKTTCELSEEEKLSIDEAINLAWSNDEWDLLLELVSSEGTPDLFHYQHSLTGLTPLMVFAGKGRVGDMCMLLSCGADCHLRAKDGMTALEIAERENQPEAAEILKKHMDNDFSNSIEEKKLLDKYLATVNPELVDDVLIEQLIRKICIDSTDGGILVFLPGWDDINRTRERLLASPFFKNSSMFMLISLHSMVPSMEQKKVFRHPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWISKASAKQREGRAGRCQPGICYHLYSRTRAASLPDFQIPEIRRMPIEELCLQVKLLDPSCKVEEFLRKTLDPPVFESISNAILVLQDIGAFSNDEKLTHLGEKLGSLPVHPLICRMLFFAILMNCLDPALTLACASDYRDPFTLPMLPEEKKRASAAKSELASLYGGCSDQFAVLAAFECWNNAKKMGLEARFCSQYFVSSSAMNMLSGMRRQLQAELIRIGFIHEDVSGYSVNTHDPGVLHAVLVAGLYPRVGRFLTNKGGKRVIVETTSGDKVRLHNHSTNFKLSFKKNLDNTLIVYDEITRGDGGMNIRNCTVVGPLPLLLLSTEIAVAPAEENDEGDVDDAVGSEDEAGSEDGMEFDAESSGGREDKLMSSPDNMVKVIMDRWLYFRSTAIDVAQLYCLRERLSAAILYKVTHPRNTLPPIMAASVHAIACILSCDGCIGVSAMLEGVDTLTTMVNATSLGKPATGTRRFGKRPKGSLAELLNYDGRQNSGPHFKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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