SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34780 | AT | Annotation by Michelle Graham. TAIR10: maternal effect embryo arrest 22 | chr2:14668653-14673607 FORWARD LENGTH=1297 | SoyBase | E_val: 1.00E-113 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0032876 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| UniRef100_B9SB08 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SB08_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M723 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M723_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g45120 not represented in the dataset |
Glyma02g45120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g03630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g281900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g45120.2 sequence type=CDS gene model=Glyma02g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTCTCAACGAATCGAGATCAGACTCCCAAATCTGACTCCACGAACCCCTGCTGTGAACTCTGGAAGAAGAAGTACTCGAAGACCCAAGAATCGCGGAATGCTCTGCGACAAGCCGTCAAGGTTCTTGAACAAAAAATTAACGAAATCCAGTCCCGCTACAACAAAGTATGTGGGGCCAAAGTGGAAAGAGAGGAAAAATTGGGAGAATTTGTTGCTGCTAGGGTGCATTTAGAGAGTGAAACTTTCAGCTTGGAGTCTCAGATTGTTACTCCCATAACAAACCAGGGACGTGGCGGGGATGGAAATGAGAATAGGACCTTACAATCTGATTGGGAAAAGGAAATTGGTAGATTGAAGGAGCTTATAGAAGTGGAGAAGGGAAGGGCTGATTCTGAGAGGAAGAATGCTACTGAAGCTTGCAAGTTACTAGAGAATGAGAAGAATAAGGTTGTTGAAAAGGAAAAGGAAATTGGTGGATTGAAGAGGCTTATAGAGGCAGAGAAGAGAAGGGCTGATTCTGAGAGCAAGAAAGCTGCTGAAGCTTGCAAGATGGTAGGGGATGAGAAGAATAAGGTTGTTGAAAAGGAAAAGGAAATTGTTGGATTGAAGAGGCTTATAGAGGCAGAGAAGAGAAGGGCTGATTCTGAGAGCAAGAAAGCTTCTGAAGCTTGCAAGTTGGTAGGGGATGAGAAGAATAAGGCTGCTGAAAAGGAGGAGGGAATCCGTAGATTGAAGGGGATTATGGAGGTGGAGAAGAGAAAGAATGATTCTGAGAGGAAGGAAGACACTGAAGCATGCAAGTTACTTGGAGAAGAGAAGAAAAAGGTTGCTGAAAAGGAAAAGGAAATTGGTAGATTGAAGGGGTGTATAGAGGAGAAGAAGAGAAGGGTTGATTCTGAGAGGAAGAAAGCTACTGAAGCTTGCAAGTTACTAGAAGAAGAGAAGAATAAGGCTGCCGTAAAGGGGGAGATTGCCAGAATTGAAGCAGAGAAGGCAGTGAAGTATAGTTTTCAGATTGGTCAATTAGAGAAACAGGTTAATGAAGCAAAAACAAAGTTGGTGTCTGAGATTTCTACGTTTAGAGAGGCAACCAAAAAGTTTGAAGCTGAAAACCACAAACTATTAGCAGAGAAAAGAAATGCTGAGTCGGGGATGGCAAAAGCGAATGAAAGGTTAGAGGTTGAAAAACAAAAGGTCAATGAGGAAAAAAGGCGTGCAGATGCAGAGATGGTTAAATTAGAGAAGCAGAAGGCGCTTGCTAAGGATAACTGGAACAAGTTCATGAAAGAGAAATGTCTTGCTGATCAGATGTCTCAGCAGTTAGAAGAGGATAAGAAGACGATTGAGGATTTGAAACGGAAGATCCATGAACTCTCATCCTTGACAAAACCTGTTGAAATGGCTGCTGACAGCAAGGTCAATGCTGATAGTACAGAAGTGAAGCTTTTGAAAAACAAACTTAAGCTTGAAAAGCTAAGAGCAAAACATACCAGGCAAAAATATAAGTTAGAAACAAGTCGTTACAGTATTTTACGGCATGATTTAGGTCGTCTAAAGATGGATTTCATTCAATTTCTACAACGCCTTGATATACTGGATGCATCCTTTTCACCTGTCGCTGGAAGTATGCATGGCCAAACAAAGTTTGAGAATATACTAGATATGCAGAATTCAAATGTCACGAGACAAATTTGCAATCTAAATTTGTCTGAGACATGTCGCCAATTTGAGAATGAGCTTCTGGAACCCTGCTGCACAACAATTTATGCAAGTGACCCATTGAGGAAAAACATACAGAACACTCAACTCCTCACTCCAGGTGGAAATTACTCTGAAAAATCCATCACAGGTATTGGTTCTAAATTGGAGCCTCTTGTTAGAGGATCAGACAGAACAAAGTTACAGAGTTCTGCAGTAAATTCCAGTACAGAATCTTTTTCTGATGGACAGTTGATGGGCTCACAGGATGCAGCCATTTTCCCAGTTACTGCATCAGCAAAATTAACTCAGGACTGCAAGCCACCTGACAAATCTGTTGATGTGCACCACAGGAAGAGGAAAAGAATGCAGGACACAATTGAATATAATGCAAATTTATCTCCTGAGAAACTCTCTGATTTGCATGGTTTGATTTATAGAAAAGTTGGCAAATGCTTAGAAGGAGGAAAAGAGGTGCTTCATAATCTGAATAATTTACAGGAAGAGAATAAAAGGGCCCACAAAAAGAGAAAGAAATCTCGTAGAGAAAAAGTGGACATGATACCTTTGGTTAACAGGGATGAGCAAAAGGGCGCAGAAGAGGCCGAGACTGAGGTCTATGACGATGCAAATGTCTGTAGACATACTTCCTGCCTTGCTCCACATACTTTAGAAACCTCTGAAGCATGTGGGGATAGGATATGTGATGCTGCGAATAATTTCGATTCGATGGTTAATTTTGATACCGTGCCTGATGGAAATTATATGAAATTATTAGAATTAGAAGATGCTACCAGTGAGGAATGCTATAGAAAAGCAATGGATTTTCCCATTTCTCCATCTCTTCCTGAAATTGAATTTTGTGACACATTTGAAGAGGGTAATTTGACGAATACGTCTCTAGAGAAAGCACTCCAAGATGACATGTTGAGTTCAAGAACAGACCTGTTTACTTCACCTTACCTCAATGTAATTAATGTTGAAATCAATTCTAACGAACAAAAATGTGATGATTGCGGAGTTTCTTGTAATTTACATATGCGCATTACAGAAAAGCCAAGGACAGCTTTTTCGGTGGAGGATGTAATTGGATCATTAAACAATCAACTTCCTGAATTTTGTGTTGTCTTTTCAAATATTGAGGACAATAGTATCATATCTAGGATACTTGTTGCTACAAAAAATTGTATAGCTCGGTGCAATTTGGCTTCTCAAACAGGCTGGGGGGTTGCTAACATTCTGACTGCACTTAAAATGGAAGAAAAGCTCTCACAGAAGGAGAAGGTTTCAGTACTGTTAACACTTATGATGTTCAACTTTGCCATGACTGCAACAAAGACATTTGGAAAACTCTGGGATGGGAATTTATTCCACTGCTTGCAATCTTATTCTGAACATATTTGCACAGTTATGTCTGTTGCAGAGACAAGAGTCCTGTTTGTAGAGAATTATTCTTTGCATGAGCTGCTTAGCCTCATTGAAGATTTTCTTATTGAGGGAAAAGTAATAGTAAACAATAGAGTATATGCTGAAACTTTGTCTTGTGATTTGAGAGTTAATGATTTTCTGGATTGTGTTAATCAAGTATCATCCGATGTAGCTTCAAGTGAACAATTGGCGGCAGCAAGTATTATATTAGCATCAGTATGTGCTGCAACTGATTATGTTGGATTTATTTGTGATGCTTCATATCATATTCTTCAGTCATGCAAGTGGGATTCTCTGATGGTGCTGACTATTCTCCATATTTTTGCTTATTTGGGCGGAGAGAAGTTTTTTAACATGGATAATTTTGGATTAATGGTGACCGTTTTGAAGTCTCTAGTTATGTTTCTTGAGGATGAGAGCCCATCTGTTGCATCTGCCTGTCTTCCTTCAATAAATCAGCTGCATGCTGAGTTGTGTATGAATGTTAAATGCCCATTCTTGGAAGGTGTTGAATCCATTGATGCAGTTGCATGCTTGCTCTTGGAAGAGATAAAGCGAATAAATTTGTCTGATTCCAGATTAATGTCAGACAATTATGATGCTGAACTATGGTATAATCAGGATGCAATTCAATGTACCATTAGCAAGAACTGTGATGTGCCCTGTTTGAGAAAATTCTCGATTTTTGCTACTCAACCAGATGCCCTTAGGAACGTCAATTTTTGTCGCCTGAATGACGTCCTGTCATTGGTGGAACTGGTTTCAAACAAAATGAGCTGGCACTGGGCTGATATCAAACTTGTTCCTCAGCTTCTGAATATACTCGACTCGTGTGTAGAGGAGAACTTTGCTGTTCGGATAATTGTTCTTCTTGGTCAACTTGGGAGGACTGGAGTAGATTTTGGTGGATATGAAGATAAAGGAGTTGGAAACCTGAGATGTTATTTGTTTACTTATTTTTGCCGCACCTCTTCCATGAAAGCAGGTCTTTCTCTTCAAGTTGCTGCTGCCACTGCTCTGTTTGGCCTTCTTCCTCTTGATTTTGAAACCCTTTTTCATACTAAAATCAATCTTTCAGCATATTCTAAATCGGTTTCTGACAATGCTGAAAGTTTGAGGAAGTGGTTCTCTGGGCTGGATAAAGATCAACAGAAATTGCTATCTGATGTATTTAACATGTAA
>Glyma02g45120.2 sequence type=predicted peptide gene model=Glyma02g45120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFSTNRDQTPKSDSTNPCCELWKKKYSKTQESRNALRQAVKVLEQKINEIQSRYNKVCGAKVEREEKLGEFVAARVHLESETFSLESQIVTPITNQGRGGDGNENRTLQSDWEKEIGRLKELIEVEKGRADSERKNATEACKLLENEKNKVVEKEKEIGGLKRLIEAEKRRADSESKKAAEACKMVGDEKNKVVEKEKEIVGLKRLIEAEKRRADSESKKASEACKLVGDEKNKAAEKEEGIRRLKGIMEVEKRKNDSERKEDTEACKLLGEEKKKVAEKEKEIGRLKGCIEEKKRRVDSERKKATEACKLLEEEKNKAAVKGEIARIEAEKAVKYSFQIGQLEKQVNEAKTKLVSEISTFREATKKFEAENHKLLAEKRNAESGMAKANERLEVEKQKVNEEKRRADAEMVKLEKQKALAKDNWNKFMKEKCLADQMSQQLEEDKKTIEDLKRKIHELSSLTKPVEMAADSKVNADSTEVKLLKNKLKLEKLRAKHTRQKYKLETSRYSILRHDLGRLKMDFIQFLQRLDILDASFSPVAGSMHGQTKFENILDMQNSNVTRQICNLNLSETCRQFENELLEPCCTTIYASDPLRKNIQNTQLLTPGGNYSEKSITGIGSKLEPLVRGSDRTKLQSSAVNSSTESFSDGQLMGSQDAAIFPVTASAKLTQDCKPPDKSVDVHHRKRKRMQDTIEYNANLSPEKLSDLHGLIYRKVGKCLEGGKEVLHNLNNLQEENKRAHKKRKKSRREKVDMIPLVNRDEQKGAEEAETEVYDDANVCRHTSCLAPHTLETSEACGDRICDAANNFDSMVNFDTVPDGNYMKLLELEDATSEECYRKAMDFPISPSLPEIEFCDTFEEGNLTNTSLEKALQDDMLSSRTDLFTSPYLNVINVEINSNEQKCDDCGVSCNLHMRITEKPRTAFSVEDVIGSLNNQLPEFCVVFSNIEDNSIISRILVATKNCIARCNLASQTGWGVANILTALKMEEKLSQKEKVSVLLTLMMFNFAMTATKTFGKLWDGNLFHCLQSYSEHICTVMSVAETRVLFVENYSLHELLSLIEDFLIEGKVIVNNRVYAETLSCDLRVNDFLDCVNQVSSDVASSEQLAAASIILASVCAATDYVGFICDASYHILQSCKWDSLMVLTILHIFAYLGGEKFFNMDNFGLMVTVLKSLVMFLEDESPSVASACLPSINQLHAELCMNVKCPFLEGVESIDAVACLLLEEIKRINLSDSRLMSDNYDAELWYNQDAIQCTISKNCDVPCLRKFSIFATQPDALRNVNFCRLNDVLSLVELVSNKMSWHWADIKLVPQLLNILDSCVEENFAVRIIVLLGQLGRTGVDFGGYEDKGVGNLRCYLFTYFCRTSSMKAGLSLQVAAATALFGLLPLDFETLFHTKINLSAYSKSVSDNAESLRKWFSGLDKDQQKLLSDVFNM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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