Glyma02g44850 - SoyBase

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Report for Sequence Feature Glyma02g44850

Feature Type:	gene_model
Chromosome:	Gm02
Start:	49286681
stop:	49289178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g44850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12300	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr5:3978508-3979632 REVERSE LENGTH=374	SoyBase	E_val: 1.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_D7M4I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4I2_ARALL	SoyBase	E_val: 5.00E-83	ISS
UniRef100_I1M745	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M745_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g44850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g44850

Paralog	Evidence	Comments
Glyma14g03910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g44850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g279900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g44850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g44850

Limit To All Plant Sequences

>Glyma02g44850.2   sequence type=transcript   gene model=Glyma02g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAAGTGGGTCCTCCAATAGCATTAGTGTCATCAGTGGATCAAGTTATGCACTAGAGAAGAATAGATATATTATATATGGAAGCTGCATTGTCAAGCAAAGCAAACCCAACACCAAAAGAAAAAGTGGCATCCAAACAAACATGTACATCATAATACTCTTCTCTGTTCATTTCCATGCTTCAGCCTTCATTTTTCACCTACTACCACAAGGTCCTTAAACCCCACTTCCATTCCATAAAGCAAGAAACTTTATTCAACTCCAAGTTTCTCTCTCTCTCTCTCTCTCTCTCTTTCCATGCTTGTTCCTGAATTCATGGATTGATTTGACAAATGTCTTCAACTACAAGATACTCACCCCAACATACATAGAGAACCAGGTTATCTAACTTTCTGTTACCATTCATTCTACTAGGTGATCACTGATGATCCAAATATCAACACCAACTCTTTTTCTTTTGTGTTTCCTAATTTTGGAAACCTTCTGGCTGGTTGCAAAGCAAAATTCCAAGGCATAACAAGGGTTGGAAACTTGGAATGGATTCATTCAATCAGAGTGTTCAGAATTCCAGCTTCAGGTACAATCCAAATTTGAACACAAGGACACATGCAGATGAAGAAGCTGAGTTCTCAGGAATTCTTGATATCTTTGTCCATCATGCCAGGAATATTCATAACATATGCATCTATGACAACCAGGATGTCTATGCTAAGTTCTCTCTCACTTACAACCCTGATGAGACTCTCTCTACAAGAATCATCAATGGAGGTGGCAAAAACCCAACATTCAATGAAAACTTGAGGTTGAAGATCACCCAAATGAATGCTGTTCTGAAATGTGAAGTTTGGATGTTTAGTAGGTCAAGGATTCACATGGAAGACCAGCTTTTGGGGTTTGCTTTGGTCCCAATTTCACAAGTTGTTGGCAAAGGAAAGTTGACTGAAGATTACAGCCTTTCCTCCACTGATCTTTTCCACTCTCCTGCAGGAACTGTCCAACTAACACTGTCTTTGGACCCCTCTTTGGCAATCAACTCCTCAGTGAATTTGATACCTGAATCAGCAAAGAACTCATCAATATCATCAGAAGTTATTTTGCTTGATAGAAAGATCTCAGAAGTTATGTTGGATCCAGTTGAGTATGCTAGAATTGAATTTCCTGACATCAGTGTGGTGAAGGAGAATCAGCAAATGGTATCTGAGTACTTCAATTTGGCTTCTCAAGATACTAATTCTGCTCCTTCAAGGTCCAACATTGGAGGGTCACTACCATTTCTTCACCTTGGTGCATCTCCTCAACTTGATGATTATGAGATGACTATGATGAGCTCACCAGATGAGAATCATATAGGGCCCATTTCTCCAAATGAGAGCATTCAGAACTCTTGCTTCCCAGGTTCTACCATCACAACCTTGAGTAGTGATGATATAAACTCAGCAGATTCAGTTGAGAAAAAGAACCATTTGAGCACTGGTGACTCATCAAATTCTATCACTGTGTCAATCACTGTGGAAGGTACTCAAAACTGTGGTGCTGGTCCAGATACCCCAACTTCCAAGAAAGAAGAAGGTGAGGCCAGAGGTAACAAAGATGCAAACTTCTCAAGCAAGGAAAAGGAAAGCAAAAAAATCAATAATAACAACACAGAAGCTTCAAAGTTTGGTCAAGTTTATTCAGCTCCACTAGGGAACATCAATTTAGAAGCTGAGCAAGCTGCTATGCAAAAACAAATAGTGGACATGTATATGAGGAGCATGAAGCAGTTCACTGAGTCCTTGGCAAAAATGAAGCTACCAATGGACCTTGACAAACCTGAAAAAGTGGATCATGGTGATGTTGATGTGATTCAGAATCTTGACAACAGCAAATTAGAAATTGATAAGAAGAAAAAGGATGGATCACGTGTGTTTTATGGTAGTAGAGCATTCTTCTAAGTTCTAATCACCTCCCTCTTGGTGTTGAAAATAGCAAGCATATGAGATTGTGAGAATTTAATTATTATAACATCAGGTACCTACCTCGATTTCCTCAGTGATATTTATTGAAGATTTTAATTAGTCCTGGTTTGTTTGACCTGCACCTTAGGTAATGACAATAATATTCTGTTTTAGATGTCTTATTGATTGTTTAACTCATGGCTGTGCAACCCCAAAAAATGCCTCATGAGTATGCATAAGTTTTCTATAGTGTAATCATGGCAAGGTTTTTGTCAATTTTAGTACCATTAAAATCAGTGTGACTTTAAAGCATGTTTATGTACTAAAAAAATGGCAACTCTTGTAAAGAGGTTTAAATATATGAAGAGTAAAAGCTAATTTTTTAGAATTCAATGTGATTTAGTTAACAATACATGTTGAATTCGTT

Coding sequences of Glyma02g44850

Limit To All Plant Sequences

>Glyma02g44850.1   sequence type=CDS   gene model=Glyma02g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCATTCAATCAGAGTGTTCAGAATTCCAGCTTCAGGAATATTCATAACATATGCATCTATGACAACCAGGATGTCTATGCTAAGTTCTCTCTCACTTACAACCCTGATGAGACTCTCTCTACAAGAATCATCAATGGAGGTGGCAAAAACCCAACATTCAATGAAAACTTGAGGTTGAAGATCACCCAAATGAATGCTGTTCTGAAATGTGAAGTTTGGATGTTTAGTAGGTCAAGGATTCACATGGAAGACCAGCTTTTGGGGTTTGCTTTGGTCCCAATTTCACAAGTTGTTGGCAAAGGAAAGTTGACTGAAGATTACAGCCTTTCCTCCACTGATCTTTTCCACTCTCCTGCAGGAACTGTCCAACTAACACTGTCTTTGGACCCCTCTTTGGCAATCAACTCCTCAGTGAATTTGATACCTGAATCAGCAAAGAACTCATCAATATCATCAGAAGTTATTTTGCTTGATAGAAAGATCTCAGAAGTTATGTTGGATCCAGTTGAGTATGCTAGAATTGAATTTCCTGACATCAGTGTGGTGAAGGAGAATCAGCAAATGGTATCTGAGTACTTCAATTTGGCTTCTCAAGATACTAATTCTGCTCCTTCAAGGTCCAACATTGGAGGGTCACTACCATTTCTTCACCTTGGTGCATCTCCTCAACTTGATGATTATGAGATGACTATGATGAGCTCACCAGATGAGAATCATATAGGGCCCATTTCTCCAAATGAGAGCATTCAGAACTCTTGCTTCCCAGGTTCTACCATCACAACCTTGAGTAGTGATGATATAAACTCAGCAGATTCAGTTGAGAAAAAGAACCATTTGAGCACTGGTGACTCATCAAATTCTATCACTGTGTCAATCACTGTGGAAGGTACTCAAAACTGTGGTGCTGGTCCAGATACCCCAACTTCCAAGAAAGAAGAAGGTGAGGCCAGAGGTAACAAAGATGCAAACTTCTCAAGCAAGGAAAAGGAAAGCAAAAAAATCAATAATAACAACACAGAAGCTTCAAAGTTTGGTCAAGTTTATTCAGCTCCACTAGGGAACATCAATTTAGAAGCTGAGCAAGCTGCTATGCAAAAACAAATAGTGGACATGTATATGAGGAGCATGAAGCAGTTCACTGAGTCCTTGGCAAAAATGAAGCTACCAATGGACCTTGACAAACCTGAAAAAGTGGATCATGGTGATGTTGATGTGATTCAGAATCTTGACAACAGCAAATTAGAAATTGATAAGAAGAAAAAGGATGGATCACGTGTGTTTTATGGTAGTAGAGCATTCTTCTAA

>Glyma02g44850.2   sequence type=CDS   gene model=Glyma02g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCATTCAATCAGAGTGTTCAGAATTCCAGCTTCAGGTACAATCCAAATTTGAACACAAGGACACATGCAGATGAAGAAGCTGAGTTCTCAGGAATTCTTGATATCTTTGTCCATCATGCCAGGAATATTCATAACATATGCATCTATGACAACCAGGATGTCTATGCTAAGTTCTCTCTCACTTACAACCCTGATGAGACTCTCTCTACAAGAATCATCAATGGAGGTGGCAAAAACCCAACATTCAATGAAAACTTGAGGTTGAAGATCACCCAAATGAATGCTGTTCTGAAATGTGAAGTTTGGATGTTTAGTAGGTCAAGGATTCACATGGAAGACCAGCTTTTGGGGTTTGCTTTGGTCCCAATTTCACAAGTTGTTGGCAAAGGAAAGTTGACTGAAGATTACAGCCTTTCCTCCACTGATCTTTTCCACTCTCCTGCAGGAACTGTCCAACTAACACTGTCTTTGGACCCCTCTTTGGCAATCAACTCCTCAGTGAATTTGATACCTGAATCAGCAAAGAACTCATCAATATCATCAGAAGTTATTTTGCTTGATAGAAAGATCTCAGAAGTTATGTTGGATCCAGTTGAGTATGCTAGAATTGAATTTCCTGACATCAGTGTGGTGAAGGAGAATCAGCAAATGGTATCTGAGTACTTCAATTTGGCTTCTCAAGATACTAATTCTGCTCCTTCAAGGTCCAACATTGGAGGGTCACTACCATTTCTTCACCTTGGTGCATCTCCTCAACTTGATGATTATGAGATGACTATGATGAGCTCACCAGATGAGAATCATATAGGGCCCATTTCTCCAAATGAGAGCATTCAGAACTCTTGCTTCCCAGGTTCTACCATCACAACCTTGAGTAGTGATGATATAAACTCAGCAGATTCAGTTGAGAAAAAGAACCATTTGAGCACTGGTGACTCATCAAATTCTATCACTGTGTCAATCACTGTGGAAGGTACTCAAAACTGTGGTGCTGGTCCAGATACCCCAACTTCCAAGAAAGAAGAAGGTGAGGCCAGAGGTAACAAAGATGCAAACTTCTCAAGCAAGGAAAAGGAAAGCAAAAAAATCAATAATAACAACACAGAAGCTTCAAAGTTTGGTCAAGTTTATTCAGCTCCACTAGGGAACATCAATTTAGAAGCTGAGCAAGCTGCTATGCAAAAACAAATAGTGGACATGTATATGAGGAGCATGAAGCAGTTCACTGAGTCCTTGGCAAAAATGAAGCTACCAATGGACCTTGACAAACCTGAAAAAGTGGATCATGGTGATGTTGATGTGATTCAGAATCTTGACAACAGCAAATTAGAAATTGATAAGAAGAAAAAGGATGGATCACGTGTGTTTTATGGTAGTAGAGCATTCTTCTAA

Predicted protein sequences of Glyma02g44850

Limit To All Plant Sequences

>Glyma02g44850.1   sequence type=predicted peptide   gene model=Glyma02g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSFNQSVQNSSFRNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPTFNENLRLKITQMNAVLKCEVWMFSRSRIHMEDQLLGFALVPISQVVGKGKLTEDYSLSSTDLFHSPAGTVQLTLSLDPSLAINSSVNLIPESAKNSSISSEVILLDRKISEVMLDPVEYARIEFPDISVVKENQQMVSEYFNLASQDTNSAPSRSNIGGSLPFLHLGASPQLDDYEMTMMSSPDENHIGPISPNESIQNSCFPGSTITTLSSDDINSADSVEKKNHLSTGDSSNSITVSITVEGTQNCGAGPDTPTSKKEEGEARGNKDANFSSKEKESKKINNNNTEASKFGQVYSAPLGNINLEAEQAAMQKQIVDMYMRSMKQFTESLAKMKLPMDLDKPEKVDHGDVDVIQNLDNSKLEIDKKKKDGSRVFYGSRAFF*

>Glyma02g44850.2   sequence type=predicted peptide   gene model=Glyma02g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSFNQSVQNSSFRYNPNLNTRTHADEEAEFSGILDIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPTFNENLRLKITQMNAVLKCEVWMFSRSRIHMEDQLLGFALVPISQVVGKGKLTEDYSLSSTDLFHSPAGTVQLTLSLDPSLAINSSVNLIPESAKNSSISSEVILLDRKISEVMLDPVEYARIEFPDISVVKENQQMVSEYFNLASQDTNSAPSRSNIGGSLPFLHLGASPQLDDYEMTMMSSPDENHIGPISPNESIQNSCFPGSTITTLSSDDINSADSVEKKNHLSTGDSSNSITVSITVEGTQNCGAGPDTPTSKKEEGEARGNKDANFSSKEKESKKINNNNTEASKFGQVYSAPLGNINLEAEQAAMQKQIVDMYMRSMKQFTESLAKMKLPMDLDKPEKVDHGDVDVIQNLDNSKLEIDKKKKDGSRVFYGSRAFF*

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