Glyma02g44340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g44340): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g44340): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g44340

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48930219
stop:	48935075
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g44340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21170	AT	Annotation by Michelle Graham. TAIR10: 5'-AMP-activated protein kinase beta-2 subunit protein \| chr5:7205718-7208239 FORWARD LENGTH=283	SoyBase	E_val: 6.00E-111	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0043562	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004679	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP-activated protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1616	KOG	Protein involved in Snf1 protein kinase complex assembly	JGI		ISS
PTHR10343	Panther	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	JGI		ISS
PF04739	PFAM	5'-AMP-activated protein kinase beta subunit, interation domain	JGI		ISS
UniRef100_Q7XYX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AKIN beta1 n=1 Tax=Medicago truncatula RepID=Q7XYX8_MEDTR	SoyBase	E_val: 4.00E-173	ISS
UniRef100_UPI0001B6414B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B6414B related cluster n=1 Tax=unknown RepID=UPI0001B6414B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g44340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g44340 not represented in the dataset	Glyma02g44340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g44340

Paralog	Evidence	Comments
Glyma14g04470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g44340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g275500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g44340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g44340

Limit To All Plant Sequences

>Glyma02g44340.2   sequence type=transcript   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATGTCTGGTGCATGAGAGACAGAGAGCGAGAGATTAGGAGGCAGTGTAGGTTCCTCTAGCTCCATTACAACGAGGTAATGGCCCTCCTTTTCTCAATCAAATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGAAATATATAACGCTTGTCAATTATATAAACCTTTTTTTCTTTTTTTTGGTAGCCTCAGTCTGTAAAGATGAAAATTTAAATAATACTCCTCAACGGGTGGTATATGAAGGTCTTGTGTCTATATATGCTTGAGGCTTCTGTTCGAATTGGTAAATTAAACTTTTTGTTTTTCAATTACTTTTTGTTTCTTTTCCTTCTTGAATTTTTGAAATATATCAATAGGGTGCC

>Glyma02g44340.3   sequence type=transcript   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATGTCTGGTGCATGAGAGACAGAGAGCGAGAGATTAGGAGGCAGTGTAGGTTCCTCTAGCTCCATTACAACGAGGTAATGGCCCTCCTTTTCTCAATCAAATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGTGAGATTCAACGACTCCCTTTTTTGGTAACAATAGTGCTGGATTGTATTTTTTGACATAAAAAGTTATCATAACTGCAAATAGTCTACAATAGTAAAATGAGATTAGTACCAGTAAATTTTATTACATGCAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGAAATATATAACGCTTGTCAATTATATAAACCTTTTTTTCTTTTTTTTGGTAGCCTCAGTCTGTAAAGATGAAAATTTAAATAATACTCCTCAACGGGTGGTATATGAAGGTCTTGTGTCTATATATGCTTGAGGCTTCTGTTCGAATTGGTAAATTAAACTTTTTGTTTTTCAATTACTTTTTGTTTCTTTTCCTTCTTGAATTTTTGAAATATATCAATAGGGTGCC

>Glyma02g44340.4   sequence type=transcript   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTGGCAATTTGGCATTACTTAAAAATAAATATAGAATTTCCTTGTGTTTTTCAGGTTCCTCTAGCTCCATTACAACGAGGTAATGGCCCTCCTTTTCTCAATCAAATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGAAATATATAACGCTTGTCAATTATATAAACCTTTTTTTCTTTTTTTTGGTAGCCTCAGTCTGTAAAGATGAAAATTTAAATAATACTCCTCAACGGGTGGTATATGAAGGTCTTGTGTCTATATATGCTTGAGGCTTCTGTTCGAATTGGTAAATTAAACTTTTTGTTTTTCAATTACTTTTTGTTTCTTTTCCTTCTTGAATTTTTGAAATATATCAATAGGGTGCC

Coding sequences of Glyma02g44340

Limit To All Plant Sequences

>Glyma02g44340.1   sequence type=CDS   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACGCTAACGGCAGAGAAGACGGATCCATTCCCCCCGCCGCCGCCGATCCCTCCGCCGCCGCACGTGGAACTCACGCGCCGCCGGTCTCTCTCCCTCCGGTTCGCGCCTTCTCCTCCGATTCAATGGCCAATAGCCCGCCGCACAGCCCTCGCCGCTCCAGATCGCCGATCCTCTTCGGTCCTCAGGTTCCTCTAGCTCCATTACAACGAGGTAATGGCCCTCCTTTTCTCAATCAAATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGA

>Glyma02g44340.2   sequence type=CDS   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGA

>Glyma02g44340.3   sequence type=CDS   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTAGTACCAGTAAATTTTATTACATGCAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGA

>Glyma02g44340.4   sequence type=CDS   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCAGAATGAGTCTCATGGTATTGTTAATCACCCTCCTGAGCAAGGGATCCCTGTCATGATTACATGGAACTATGGTGGTAACAATGTGGCTGTGGAGGGATCTTGGGATAACTGGACATCTAGGAAGGCATTACAGCGAGCTGGCAAGGATCACTCATTCCTTATAGTCCTTCCACCAGGTATATATCATTACAGGTTCATTGCTGATGGTGAAGAGAGATTTATCCCAGAGCTACCTAATGTAGCTGATGAGATGGGGCATGTCTGCAATCTTCTTGATGTTAATGATTATGTGCCAGAAAACCCCGATGGTGTGTCTGAGTTTGAAGCACCACCCTCCCCCGAATCCAGTTATGGCCAAGCATTTCCAGCTGAAGAAGACTTTGCAAAAGAGCCAATGGCTGTTCCTTCGCAACTGCATCTTACTGTCCTAGGTATGGAAAACTCTGACATAGGTTCCTCTTCAAAGCCCCAACATGTTGTGCTAAATCATGTCTTCATAGAGAAAAATTTGGCCTCAAAGTCTGTTGTTGCCCTGGGACTCACTCACAGGTTCCAGTCCAAATATGTGACAGTTGTCCTTTACAAACCGCTCAAGAGGTGA

Predicted protein sequences of Glyma02g44340

Limit To All Plant Sequences

>Glyma02g44340.1   sequence type=predicted peptide   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNANGREDGSIPPAAADPSAAARGTHAPPVSLPPVRAFSSDSMANSPPHSPRRSRSPILFGPQVPLAPLQRGNGPPFLNQMWQNESHGIVNHPPEQGIPVMITWNYGGNNVAVEGSWDNWTSRKALQRAGKDHSFLIVLPPGIYHYRFIADGEERFIPELPNVADEMGHVCNLLDVNDYVPENPDGVSEFEAPPSPESSYGQAFPAEEDFAKEPMAVPSQLHLTVLGMENSDIGSSSKPQHVVLNHVFIEKNLASKSVVALGLTHRFQSKYVTVVLYKPLKR*

>Glyma02g44340.2   sequence type=predicted peptide   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWQNESHGIVNHPPEQGIPVMITWNYGGNNVAVEGSWDNWTSRKALQRAGKDHSFLIVLPPGIYHYRFIADGEERFIPELPNVADEMGHVCNLLDVNDYVPENPDGVSEFEAPPSPESSYGQAFPAEEDFAKEPMAVPSQLHLTVLGMENSDIGSSSKPQHVVLNHVFIEKNLASKSVVALGLTHRFQSKYVTVVLYKPLKR*

>Glyma02g44340.3   sequence type=predicted peptide   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLVPVNFITCRKALQRAGKDHSFLIVLPPGIYHYRFIADGEERFIPELPNVADEMGHVCNLLDVNDYVPENPDGVSEFEAPPSPESSYGQAFPAEEDFAKEPMAVPSQLHLTVLGMENSDIGSSSKPQHVVLNHVFIEKNLASKSVVALGLTHRFQSKYVTVVLYKPLKR*

>Glyma02g44340.4   sequence type=predicted peptide   gene model=Glyma02g44340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWQNESHGIVNHPPEQGIPVMITWNYGGNNVAVEGSWDNWTSRKALQRAGKDHSFLIVLPPGIYHYRFIADGEERFIPELPNVADEMGHVCNLLDVNDYVPENPDGVSEFEAPPSPESSYGQAFPAEEDFAKEPMAVPSQLHLTVLGMENSDIGSSSKPQHVVLNHVFIEKNLASKSVVALGLTHRFQSKYVTVVLYKPLKR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain