SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g44260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g44260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g44260

Feature Type:gene_model
Chromosome:Gm02
Start:48876494
stop:48884832
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g44260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27040AT Annotation by Michelle Graham. TAIR10: Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009816GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0051225GO-bp Annotation by Michelle Graham. GO Biological Process: spindle assembly SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005719GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear euchromatin SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0015030GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Cajal body SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0035197GO-mf Annotation by Michelle Graham. GO Molecular Function: siRNA binding SoyBaseN/AISS
KOG1041 KOG Translation initiation factor 2C (eIF-2C) and related proteins JGI ISS
PTHR22891Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 2C JGI ISS
PF02170PFAM PAZ domain JGI ISS
PF02171PFAM Piwi domain JGI ISS
PF08699PFAM Domain of unknown function (DUF1785) JGI ISS
UniRef100_G7K2Y8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein argonaute 4 n=2 Tax=Medicago truncatula RepID=G7K2Y8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JIR2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIR2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g44260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g44260 not represented in the dataset
Glyma02g44260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g44260
ParalogEvidenceComments
Glyma14g04510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g44260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g274900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g44260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g44260
>Glyma02g44260.1   sequence type=CDS   gene model=Glyma02g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCGGGGCCAAATGGAACTGACAACGGGGATTCGTTGCCTCCCCCGCCTCCTGTTGTCCCATCAGATGTTGTACCTGTCAAAGCTGAGCTGGAGAAGAAGAAGGCTTTGCGGCTTCCAATAGCCAGGCGTGGCCTTGCTTCAAAAGGGACAAAGCTGCAACTTCTCACCAATCACTACAGGGTGAACGTTGCAAATACTGACGGGCATTTTTATCAGTATAGTGTTGCTCTTTTTTATGATGATGGACGACCTGTGGAGGGTAAGGGTGTAGGGAGGAAGCTTCTGGACAGGGTGCATGAGACGTATGATTCTGAATTGAATGGGAAGGATTTTGCATATGATGGTGAGAAGACTCTGTTTACTCTTGGGTCTCTTGCTCGCAACAAGCTTGAGTTTACGGTCGTTTTGGAGGATATTATTGCTTCCAGAAACAATGGAAACTGCAGCCCAGATGGCAATGGAGAACTGAATGAGAGTGACAAAAAGAGGATGAGGCGCCCTAATAGTTCCAAGGCATTTAAAGTTGAGCTTAGCTATGCTTCAAAGATTCCATTGCAGGCCATTGCCAATGCTCTACGTGGACAGGAATCCGAGAATTATCAAGAAGCTATAAGAGTGCTTGATATCATTTTGAGGCAACATGCTGCTAAGCAAGGCTGTTTGCTTGTGAGGCAATCGTTCTTCCACAATGATCCCAAGAATTTTGCTGATGTAGGAGGAGGTGTACTTGGATGCAGGGGTTTCCATTCTAGCTTTAGAACTACACAAAGTGGACTGTCTTTGAACATAGATGTCTCAACCACGATGATAATTACCCCTGGGCCTGTGGTGGACTTCCTAATATCCAATCAAAATGTGAGAGACCCCTTTTCACTTGACTGGGCCAAGGCCAAGAGGACATTAAAAAATCTGAGGATTAAAGCGAGCCCATCTAATCAAGAATTCAAAATAACTGGGATTAGTGAATTCCCTTGCAAAGATCAAACGTTTACCTTGAAGAGAAAAGGTGGTGATGATGTTGCTGAGGAAGAAGTGACAGTATATGATTATTTTGTTAATATCCGCAAGATAGATCTTCGATATTCTGGGGATCTCCCATGTATTAACGTTGGAAAGCCAAAAAGGCCAACTTATATCCCTCTTGAGCTTTGCTCTTTGGTATCCCTGCAACGTTATACAAAAGCACTATCCACTCTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCACAGGAGAGGATGAGGGTTTTGACTGATGCACTTAAAAGTAGCAATTATGGTTCCGAACCAATGCTACGTAATTGTGGGATCTCTATAAGCCCCAACTTTACTGAAGTTGAGGGTCGGGTTTTACAAGCTCCGCGGTTAAAATTTGGTAATGGGGAAGACTTCAATCCTAGAAATGGGAGGTGGAACTTCAATAACAAGAAAATTGTCAAGCCAACTAAAATAGAAAGATGGGCTGTGGTTAACTTCTCTGCACGCTGTGATACACGAGGGCTTGTGAGGGATCTCATTAAGTGTGGTGGAATGAAAGGAATTGTGATAGATCAGCCATTTGATGTGTTTGAAGAAAATGGTCAGTTTAGGCGTGCACCGCCTGTGGTTCGAGTAGAGAAGATGTTTGAATTGGTTCAGTCTAAACTTCCTGGGGCTCCTCAGTTTCTTCTTTGTCTGCTTCCTGAGAGGAAAAATTCTGATCTTTATGGTCCATGGAAGAAGAAGAATCTTGCTGAGTTTGGAATCGTGACTCAGTGTATAGCTCCGACCAGGGTCAATGACCAATATTTGACTAATGTTCTGTTGAAAATCAATGCTAAGCTTGGTGGCCTGAACTCAATACTAGGTGTTGAGCATTCTCCTTCTATTCCTATTGTTTCTAGAGCACCAACCATTATTATTGGCATGGATGTGTCTCATGGTTCGCCAGGGCAAACAGATATTCCTTCAATTGCCGCGGTGGTCAGCTCCCGAGAATGGCCACTAATATCAAAGTATAGGGCTAGCGTCCGTACCCAGTCTCCAAAGATGGAAATGATTGATAATTTGTTCAAGAAGGTTTCTGACAAGGAGGATGAAGGCATAATGAGGGAGCTTCTACTTGATTTCTATACAAGTTCTGGGAATAGAAAGCCCGATAATATAATCATATTCAGGGACGGTGTTAGTGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTTGATCAAATTATCGAGGCTTGCAAGTTTTTAGATGAAAAGTGGAACCCCAAGTTTTTGGTGATTGTTGCTCAAAAGAACCATCATACTAAATTCTTTCAACCTGGAGCTCCTGACAATGTTCCTCCTGGAACTGTAATTGATAACAAAATTTGCCATCCTCGGAATTATGATTTCTATATGTGTGCACATGCTGGAATGATTGGTACTAGCAGGCCCACACACTACCATGTTCTGTTAGACGAGATTGGCTTTTCACCTGATGATCTACAAGAGCTTGTACATTCATTATCATATGTGTATCAGAGGAGCACCACTGCCATTTCTGTCGTTGCTCCAATTTGCTATGCTCATCTGGCTGCTACTCAGATGGGTCAGTTTATGAAATTTGAAGACAAATCTGAGACATCTTCGAGTCATGGTGGTTCTGGTATGCCTGCTCCTCCCGTCCCTCAGTTGCCAAGATTGCAGGAAAATGTTTCGAGCTCAATGTTCTTTTGTTGA
Predicted protein sequences of Glyma02g44260
>Glyma02g44260.1   sequence type=predicted peptide   gene model=Glyma02g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSGPNGTDNGDSLPPPPPVVPSDVVPVKAELEKKKALRLPIARRGLASKGTKLQLLTNHYRVNVANTDGHFYQYSVALFYDDGRPVEGKGVGRKLLDRVHETYDSELNGKDFAYDGEKTLFTLGSLARNKLEFTVVLEDIIASRNNGNCSPDGNGELNESDKKRMRRPNSSKAFKVELSYASKIPLQAIANALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFSLDWAKAKRTLKNLRIKASPSNQEFKITGISEFPCKDQTFTLKRKGGDDVAEEEVTVYDYFVNIRKIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLTDALKSSNYGSEPMLRNCGISISPNFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVKPTKIERWAVVNFSARCDTRGLVRDLIKCGGMKGIVIDQPFDVFEENGQFRRAPPVVRVEKMFELVQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSILGVEHSPSIPIVSRAPTIIIGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRASVRTQSPKMEMIDNLFKKVSDKEDEGIMRELLLDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGSGMPAPPVPQLPRLQENVSSSMFFC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo