Glyma02g44235 - SoyBase

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Report for Sequence Feature Glyma02g44235

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48857441
stop:	48859747
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g44235

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35410	AT	Annotation by Michelle Graham. TAIR10: Clathrin adaptor complex small chain family protein \| chr4:16832572-16833796 FORWARD LENGTH=162	SoyBase	E_val: 6.00E-98	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0030125	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG0934	KOG	Clathrin adaptor complex, small subunit	JGI		ISS
PTHR11753	Panther	CLATHRIN COAT ASSEMBLY PROTEIN	JGI		ISS
PF01217	PFAM	Clathrin adaptor complex small chain	JGI		ISS
UniRef100_G7K2Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-1 complex subunit sigma-2 n=1 Tax=Medicago truncatula RepID=G7K2Y3_MEDTR	SoyBase	E_val: 5.00E-107	ISS
UniRef100_I3S6L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3S6L2_LOTJA	SoyBase	E_val: 5.00E-108	ISS

Expression Patterns of Glyma02g44235

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g44235 not represented in the dataset	Glyma02g44235 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g44235 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g274700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g44235

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g44235

Limit To All Plant Sequences

>Glyma02g44235.1   sequence type=CDS   gene model=Glyma02g44235   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCACTTTGTGCTTCTCATCAGTCGGCAAGGAAAAGTAAGACTCGCAAAATGGTATTCACCATACTCTCAAAAGGAGAGATCCAAGGTAATTCGTGAGTTAACTGGGCTAATTATCTCTCGAGCCCCTAAGCTGTGCAACTTTGTGGAGTGGAGGGGATTCAAAGTTGTTTATAAAAGATATGCTAGCCTATACTTTTGCATCTGCAATGATCACGAAGACAATGAATTGGAGACCTTGGCCATTATTCATCACTATGTCGAGACATTGGATCGCTATTTTGGCAGTGTTTGTGAGCTGGATTTAATTTTTAATTTTCATAAGGCATATTTTATATTGGATGAAATTTTGTTGGCTGGAGCCATGCAGGAGACTAGCAAGAGAACTACTCTGAGACTGATAGGTGCACAGGAGGATTTAGTAGAAGCTGCCAAAGAGGAAGCCAGCTCATTGAGTAATATAATCGCACAGGCCACCAAGTAA

Predicted protein sequences of Glyma02g44235

Limit To All Plant Sequences

>Glyma02g44235.1   sequence type=predicted peptide   gene model=Glyma02g44235   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIHFVLLISRQGKVRLAKWYSPYSQKERSKVIRELTGLIISRAPKLCNFVEWRGFKVVYKRYASLYFCICNDHEDNELETLAIIHHYVETLDRYFGSVCELDLIFNFHKAYFILDEILLAGAMQETSKRTTLRLIGAQEDLVEAAKEEASSLSNIIAQATK*

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