Glyma02g44145 - SoyBase

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Report for Sequence Feature Glyma02g44145

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48786975
stop:	48790822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g44145

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74470	AT	Annotation by Michelle Graham. TAIR10: Pyridine nucleotide-disulphide oxidoreductase family protein \| chr1:27991248-27992845 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0051188	GO-bp	Annotation by Michelle Graham. GO Biological Process: cofactor biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016628	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0045550	GO-mf	Annotation by Michelle Graham. GO Molecular Function: geranylgeranyl reductase activity	SoyBase	N/A	ISS
PTHR10617	Panther	FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	JGI		ISS
PTHR10617:SF9	Panther	ELECTRON TRANSFER FLAVOPROTEIN QUINONE OXIDOREDUCTASE	JGI		ISS
PF01494	PFAM	FAD binding domain	JGI		ISS
UniRef100_G7K2X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Geranylgeranyl reductase n=1 Tax=Medicago truncatula RepID=G7K2X2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JIQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIQ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g44145

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g44145 not represented in the dataset	Glyma02g44145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g44145 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g273800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g44145

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g44145

Limit To All Plant Sequences

>Glyma02g44145.1   sequence type=CDS   gene model=Glyma02g44145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGAAAATTCAAACTAGTTTTTGTTTACCTACATTTTCCATTCCAACCTCAAAACCTAAACCCTACTTAAAGTCGTTCACCATCAAAGCCTCCAAATCCATCTCCGGCCGCAAGCTCCGAGCGGCAGTGATCGGCGGCGGCCCCGCCGGATCCTCCGCGGCGGAGGCCCTAGCTTCTGGCGGAGTCGAGACCTTCCTCTTCGAGCGCAACCCGCCGTCCGTCGCGAAACCATGCGGCGGCGCCATCCCTCTCTGCATGCTCGAAGAGTTCGACATCCCTAACCACCTCATCGACCGCCACGTCACGCACATGCGCATCTTCTCCCCTTCCAACATCGCCGTCGACTTCGGCAAAACACTAAAACCCCACGAGTTCATCGCCATGCTCCGCCGTGAGGTCCTCGACTCCTTCCTCCGCTCCCGCGCGCACGCCGCCGGCGCCACCGCGATCTCCGGCCTCGTCACCGCCCTCGACCTCCCCGCCTCGCCGGACGCGCCCTACACCGTCCACTACACCGCCAACGGCTCCTCGCGCCGCTCCCTCGCCGTGGACGTCGTGATCGGTGCCGACGGAGCCAACAGCCGCGTGGCCAAAGCCATCGGCGCCGGCGACTACGCCTGCGCCATCGCGTTCCAGGAGCGGATCAAGTTACCGGACGAGAAAATGGCGTACTACGAAAATCTGGCGGAGATGTACGTAGGCGACGACGTATCACCAGATTTCTACGCGTGGGTTTTTCCCAAGTGCGACCACGTGGCAGTGGGCACGGGTACAGTGCGGTCAAAGAAAGACATTAAGCTGTACCAGCGCGGGATCAGGGAAAGAGTGAAACCAAAGATCAACGGTGGGAAAGTGATCAAAGTGGAGGCGCACCCTATTCCGGAACACCCGCGTCCGGTTCGGGTGAGGGGACGCGTGGCGCTCGTAGGAGACGCTGCTGGCTACGTGACCAAGTGTTCGGGTGAGGGTATTTATTTCGCGGCGAAATCGGGTCGCGTGTGCGGAAACGGTGTCGTAAGGGCTTCGGAGGGTGGGGATAGGATGATTGACGAGTGTGATCTGAGGAGGGAGTACCTGAAGCCGTGGGACGCCGAGTATGCTAACACGTTTAGGTTTTTGGATCTGCTGCAGAGGGTTTTCTACGGTAGTAACGCGTGCAGGGAGGCTCTGGTGGAGCTGTGTGGTGATGAGTATGTTCAACGCATGACGTTTGAGAGCTATTTGTATAAGAAGTTGGCCCGTGGGAGAGTCTTGGATCATGCTAAGCTTTTCATGAATACCCTTGGCAGCTTGGTCAGGTCTAAAGTTGTTCAAACAAGCATGGAGAGTTTCATACTATGA

Predicted protein sequences of Glyma02g44145

Limit To All Plant Sequences

>Glyma02g44145.1   sequence type=predicted peptide   gene model=Glyma02g44145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKIQTSFCLPTFSIPTSKPKPYLKSFTIKASKSISGRKLRAAVIGGGPAGSSAAEALASGGVETFLFERNPPSVAKPCGGAIPLCMLEEFDIPNHLIDRHVTHMRIFSPSNIAVDFGKTLKPHEFIAMLRREVLDSFLRSRAHAAGATAISGLVTALDLPASPDAPYTVHYTANGSSRRSLAVDVVIGADGANSRVAKAIGAGDYACAIAFQERIKLPDEKMAYYENLAEMYVGDDVSPDFYAWVFPKCDHVAVGTGTVRSKKDIKLYQRGIRERVKPKINGGKVIKVEAHPIPEHPRPVRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRVCGNGVVRASEGGDRMIDECDLRREYLKPWDAEYANTFRFLDLLQRVFYGSNACREALVELCGDEYVQRMTFESYLYKKLARGRVLDHAKLFMNTLGSLVRSKVVQTSMESFIL*

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