SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21050 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:7147890-7148957 FORWARD LENGTH=355 | SoyBase | E_val: 1.00E-130 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG4688 | KOG | Putative beta-catenin-Tcf/Lef signaling pathway component DRCTNNB1A | JGI | ISS | |
| PTHR24882 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24882:SF20 | Panther | JGI | ISS | ||
| PF09790 | PFAM | Hyccin | JGI | ISS | |
| UniRef100_G7K2W9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hyccin n=1 Tax=Medicago truncatula RepID=G7K2W9_MEDTR | SoyBase | E_val: 6.00E-153 | ISS |
| UniRef100_I1JIQ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIQ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g44120 not represented in the dataset |
Glyma02g44120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g273600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g44120.1 sequence type=CDS gene model=Glyma02g44120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGGCGACGAAGCCACCACCGTCTCCGCCGCAGACTCCCCGGAAAAAGTCCAAACCGCGATCGAATCCCTATCCTCCATCGTCCCCTCTCTCTCCATCACCACCCCCACCTCCCTCCTCTCCAACCCCGAAATCTACTCCCACATCTCCTCCCTCCTTCGGCGCCCCAACTCCGGTGCCGGCGACAACAACCTCTGCCGGTGGCTCTACGACACCTTCCAATCCGGCGTCACGGAACTCCAGCTCCTCGTCCTCCGCTTCCTCCCCGTCATCGCCGGCGTCTACCTCTCCCGCGTCGCCGACAGGAAACCCCAAGCCGGATTCGAAGCCGTCCTCTTAGCCCTGTACGCGCACGAAACAACCTCACGCGCCGGGCAAGCCGTGTCCGTCACGATCCCCGACCTCGCACAACCTAGCCTCTACCACGATCCAAAAGCGTTAACCCCTAATAACAACAAGAACATTAACTCCAGCACCGAACTCAACGTCGCTGTGGTGTCCCCTTCGCTTGAGCCACACGGCACCGTCCGGTCCACACGTAGAGCCCGAATCGTGGGCGTGGCGCTGGAGCTCTTCTACGCCAAAATCCCCCACATGCCGGTGTCCTCAAAGATCGATTTTTGCGAGTTTTGTAAACTGTGGGCGGGGCAAGACGGTGACATGTACAAGAATTTGGAAGAGGAGGAGGATAATGGAGAAGAAAGTGTTGTTTTTGTTGATGCTGAGGCGGAGCTTGAAGAGAAGGAGAAGGGGAAGGTGGAGTCTAGGGTTCCGCTGCCATGGGAGTTGTTGGAACCGGTTTTGAGGATTCTGGGGCACTGTTTGTTGGGGCAGAATAAGAGGGACGTGGAGCTTTTTGAGGCGGCGAGTGAGGCATGCAGGTGCTTGTTTGCCAGGAGCATGCATGATGTTAACGCCAAGGCTATTTTACCAATCAGGAGTCTCTTGAGGCTTTCCAAAACTCTTGTGCAAAATAATAACGAGCTTGATCCCACTGAGCTACCCTTCACTGATGTTATTTCTCTTTAA
>Glyma02g44120.1 sequence type=predicted peptide gene model=Glyma02g44120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGDEATTVSAADSPEKVQTAIESLSSIVPSLSITTPTSLLSNPEIYSHISSLLRRPNSGAGDNNLCRWLYDTFQSGVTELQLLVLRFLPVIAGVYLSRVADRKPQAGFEAVLLALYAHETTSRAGQAVSVTIPDLAQPSLYHDPKALTPNNNKNINSSTELNVAVVSPSLEPHGTVRSTRRARIVGVALELFYAKIPHMPVSSKIDFCEFCKLWAGQDGDMYKNLEEEEDNGEESVVFVDAEAELEEKEKGKVESRVPLPWELLEPVLRILGHCLLGQNKRDVELFEAASEACRCLFARSMHDVNAKAILPIRSLLRLSKTLVQNNNELDPTELPFTDVISL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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