SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20990 | AT | Annotation by Michelle Graham. TAIR10: molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) | chr5:7128737-7133397 REVERSE LENGTH=670 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0032324 | GO-bp | Annotation by Michelle Graham. GO Biological Process: molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0030151 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molybdenum ion binding | SoyBase | N/A | ISS |
| KOG2371 | KOG | Molybdopterin biosynthesis protein | JGI | ISS | |
| PTHR10192 | Panther | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN | JGI | ISS | |
| PF00994 | PFAM | Probable molybdopterin binding domain | JGI | ISS | |
| PF03453 | PFAM | MoeA N-terminal region (domain I and II) | JGI | ISS | |
| PF03454 | PFAM | MoeA C-terminal region (domain IV) | JGI | ISS | |
| UniRef100_G3ECQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rfls1 protein n=1 Tax=Glycine max RepID=G3ECQ4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JIP1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIP1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g44040 not represented in the dataset |
Glyma02g44040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g272700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g44040.1 sequence type=CDS gene model=Glyma02g44040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCTCCGTCATTGACGCTCTCCAAACGGTCCTTAACGCCTCTAAACGTCTTCCCCCACTCACTGTTCCCCTTCACGATGCCCTAGGCAAGGTCTTGGCCCAAGATGTTCGCGCCCCCGATCCTCTCCCTCCCTACCCGGCCTCCGTCAAGGACGGTTACGCCGTCGTCTCCGCCGATGGCCCCGGCGAGTATCCCGTCGTTGCCGAATCGAGAGCTGGAGATGACGCTCTCGGCCTCACTCTCTCCCCTGGAACTGTCGCTTACGTCACAACCGGAGGACCGATACCTGATGGTGCTGATGCAGTTGTTCAGGTTGAGAATACTGAAATAGTGAACAATGCCTCCGATGGTACTAAGAGGGTCAGAATATTGCTACAAACCACCAAAGGCAATGATATACGCCCAGTGGGAGTTGATATTAAGAAAGATGCAGTAGTCTTGACATCTGGAGAAAGGTTAGGTGCTTCAGAAATTGGTTTGCTTGCTACAGTTGGTGTTACAATGGTTAAGGTGTATCCTACTCCAACAGTTGCTGTTCTTTCTACTGGAGACGAGCTTGTGGAGCCAACTACTGGGCATCTGAATCGTGGTCAGATTAGGGACTCTAATCGTGCCATGCTGCTGGCAGCTGCGGTACAGCATCAGTGCAAAGTTCTGGACTTTGGTATTGCTAAGGATGACAAAGAATATCAAGGAAGGATCTTGGATAAAGCATTTGCGTCTGGAATTCATATTCTTCTAACTTCAGGAGGTGTTTCAATGGGAGACAAAGATTTTATCAAGCCTTTGCTTGAAAAGCGAGGAAAAGTACATTTCGATAAGGTGTGTATTAAACCAGGCAAGCCATTTACATTTGCAGAGATTGACTTTCAATCTACAGAGAGCAAAATTCTAGCTTTTGGGCTACCTGGAAATCCTGTCAGCTCTTTAGTTTGCTTCCATCTCTTTGTGGTCCCTGCAATACGCTACCTTGCAGGGTGGACAAATCCTCATCATTTTAGGGTACAAGCTCGGCTTCGTCAACCAATAAAGACAGATCCAATTAGGCCAGAATATCATCGTGCTTCTGTTATATGGACTGACAATGATGGATCAGGCAATCCAGGTTTTGTTGCTGTGAGCACTGGTCATCAGGTAAGCAGTCGACTACTTAGTATGAAGTCAGCTAATGCCTTGTTGGAGTTTCCAGCAACAGGCAGTGTAGTTTCTGCAGGGACTGCTGTGTCAGCTATCATAATTTCTGACCTAAGACCTATGGCATGTGATGAGAATCATAAGTCATCAGACTCAGCCTTTGCTTTGCCAGGAATTAAATCAAATAAAATAACTACTGATTCTTCAGGGGATGCTGAAGTCAAAGTGGCTATTCTTACAGTTAGTGATACAGTTGCTATGGGTGCTGGCCCAGATCGAAGTGGTCCCAGGGCAGTTTCTGTTATTAATTCTTCTTCAGAAAGACTAGGAGGAGCAAGAGTTGTAGCCACTGCTGTGGTTCCAGATGATGTGGCAAAAATTCAGGACATTCTAAGAAGATGGAGTGATATTGAACAAATGGATCTCATAATTACTCTTGGGGGGACTGGCTTTACCTCTCGAGATTTAACGCCAGAAGCTACAAAACCATTGATTGAGAAAGAAACACCTGGCCTTCTGCATGTAATGATGCAAGAGAGTTTAAAGGTGACCAAATCTGCAATGCTTTCACGCTCTGCAGCTGGAATCAGAGGATCAACCTTGATCATTAACATGCCTGGAAACCCTAATGCTGTTGCCGAGTGTATGGAAGCTTTATTGCCGGCACTTAAGCATGGTCTGAAACAGCTCAGGGGAGACAAGAAAGAAAAACATCCTCGTCACGTTCCTCATGCCGAAGCAGTTCCTGCAGATGTGTGGGAACAGAGTTATATGCTAGCCACTGGTGCTGGCTCTGATGTCTCTTGTTCCTGTTGCACGTAA
>Glyma02g44040.1 sequence type=predicted peptide gene model=Glyma02g44040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISVIDALQTVLNASKRLPPLTVPLHDALGKVLAQDVRAPDPLPPYPASVKDGYAVVSADGPGEYPVVAESRAGDDALGLTLSPGTVAYVTTGGPIPDGADAVVQVENTEIVNNASDGTKRVRILLQTTKGNDIRPVGVDIKKDAVVLTSGERLGASEIGLLATVGVTMVKVYPTPTVAVLSTGDELVEPTTGHLNRGQIRDSNRAMLLAAAVQHQCKVLDFGIAKDDKEYQGRILDKAFASGIHILLTSGGVSMGDKDFIKPLLEKRGKVHFDKVCIKPGKPFTFAEIDFQSTESKILAFGLPGNPVSSLVCFHLFVVPAIRYLAGWTNPHHFRVQARLRQPIKTDPIRPEYHRASVIWTDNDGSGNPGFVAVSTGHQVSSRLLSMKSANALLEFPATGSVVSAGTAVSAIIISDLRPMACDENHKSSDSAFALPGIKSNKITTDSSGDAEVKVAILTVSDTVAMGAGPDRSGPRAVSVINSSSERLGGARVVATAVVPDDVAKIQDILRRWSDIEQMDLIITLGGTGFTSRDLTPEATKPLIEKETPGLLHVMMQESLKVTKSAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHGLKQLRGDKKEKHPRHVPHAEAVPADVWEQSYMLATGAGSDVSCSCCT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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