Glyma02g43980 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g43980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g43980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g43980

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48669469
stop:	48673103
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g43980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16740	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L20 \| chr1:5727773-5728950 FORWARD LENGTH=126	SoyBase	E_val: 5.00E-73	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0019843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: rRNA binding	SoyBase	N/A	ISS
KOG4707	KOG	Mitochondrial/chloroplast ribosomal protein L20	JGI		ISS
PTHR10986	Panther	50S RIBOSOMAL PROTEIN L20	JGI		ISS
PF00453	PFAM	Ribosomal protein L20	JGI		ISS
UniRef100_I1JIN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: 50S ribosomal protein L20 n=1 Tax=Glycine max RepID=I1JIN3_SOYBN	SoyBase	E_val: 6.00E-83	ISS
UniRef100_I1JIN3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L20 n=1 Tax=Glycine max RepID=I1JIN3_SOYBN	SoyBase	E_val: 6.00E-83	ISS

Expression Patterns of Glyma02g43980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g43980 not represented in the dataset	Glyma02g43980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g43980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g272000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g43980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g43980

Limit To All Plant Sequences

>Glyma02g43980.4   sequence type=transcript   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTTTTGCTGTTTTTTTATTTTTTATATTTTAAATAGTACTAGTAGCCATTAATAGCTAACCCAACACAGTCTTCAGAAAAGCTAAGCCCAACAAAATACCACACCACACCAGTTAAGCGCCGCCGTCTAGCCGGAAGCACCGTATCTGTGGTGATCGCACGTTAAAATTCTCGAAATCTAAAACCCTTCGTTCTCTTCATTTCTTAGAGTAGAAAGAACAAAGAGGAGAAAATGAACAAGGATAAGATCTTCAAGCTAGCGAAGGGGTTCAGGGGTAGAGCCAAGAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAGGCCTTGCAATATTCCTACAGAGACCGCCGTAACAAAAAGAGGGACATGCGATCCCTTTGGATCCAAAGGATCAATGCTGGTACCCGCATTCATGGGGTCAACTATGGGAACTTCATGCATGGGCTGATGAAGGAGAATATCCAACTTAACAGAAAGGTTCTGTCAGAGATATCTATGCACGAACCCTATAGCTTCAAGTCTTTGGTAGATATATCACGAAATGCATTTCCCGGAAACAAGAATGTGGTGATTCCTCCTAGAAAGGTGGCCTTTTAGAGCATGTGGCACTTTAGCAAACAGTTAGTGGTAGTTTATGTTCCAATCTTGAACTATCTTTTGATTTGGGTGTAGTACACTACACATTGCTATCAATTTCAATTGCTTGTTATTCACAAACTCGTGTACTTTTTAACTACATGATCCTACTCCTCCGCTACCCCTTTCAATTGCTTTGGTGTCGGAAACATTGTACAATAATAAACCTTGATCCCAACTACGATTGGTTTTATGGATCTGATTATTGGCTGCCATTAGCATCTATCAAAAATAAAGATTTTTTAATACATGTTAAAATTGGGAAGAACAGATGTCTGAGGTTAGCAATCATCACTATTACCACACCAATCAGAAAGCCAAGTTTATAAGATAAAATTGCCAAGGCTCCAGACTAAATTTTATCTTAAATAACATGCTTCTTTTCCAGTGCTAAATGGAGTTTCTCTAATGCATTCATTACAAAGATAAACGTGTTAACCATTCACTTTGCAAAAGACAATTGCGAGTCTCTTGTAGAAAAGGAACCGTGAGATCTTTGAGTAATCTCATAAATGGTTTTAATACTTGGTGGGGTTTGTAGATAACCCAAATCCAAATGGAAATAGAGGATCATAATATTTATCGCCAACATTCATTGGTAGCTGGTCAACTGTCTTGAACCATGTTCTTGCCAACTTGCCAGTGAATCCATAGTCACCAAAGAGAAGATCAGCTACACCTTGGCCTTCAGTCCCTGGAAGCCATGCAGCCACAAGTGCGTCTACTTTTGATAGATATGGCTGAATCACAACTGGTCGGCCGGTGATGAGAACTACCACACATTGTATAGACCCACATACATTGGTGATGGTGCTTGGACCAGGCTCTGGAATAGTCAGATTCAAACTATCACCAAATGTTGTTGCATAAGGGTGTTCACCTACAACGACTATGGCACAAGAGAAGTTGTTGGACTTGACAAAGTTGGAGTCGGGATTTTCATTGAAGACAACTTTAG

>Glyma02g43980.5   sequence type=transcript   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCACACCAGTTAAGCGCCGCCGTCTAGCCGGAAGCACCGTATCTGTGGTGATCGCACGTTAAAATTCTCGAAATCTAAAACCCTTCGTTCTCTTCATTTCTTAGAAAGAACAAAGAGGAGAAAATGAACAAGGATAAGATCTTCAAGCTAGCGAAGGGGTTCAGGGGTAGAGCCAAGAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAGGCCTTGCAATATTCCTACAGAGACCGCCGTAACAAAAAGAGGGACATGCGATCCCTTTGGATCCAAAGGATCAATGCTGGTACCCGCATTCATGGGGTCAACTATGGGAACTTCATGCATGGGCTGATGAAGGAGAATATCCAACTTAACAGAAAGGTTCTGTCAGAGATATCTATGCACGAACCCTATAGCTTCAAGTCTTTGGTAGATATATCACGAAATGCATTTCCCGGAAACAAGAATGTGGTGATTCCTCCTAGAAAGGTGGCCTTTTAGAGCATGTGGCACTTTAGCAAACAGTTAGTGGTAGTTTATGTTCCAATCTTGAACTATCTTTTGATTTGGGTGTAGTACACTACACATTGCTATCAATTTCAATTGCTTGTTATTCACAAACTCGTGTACTTTTTAACTACATGATCCTACTCCTCCGCTACCCCTTTCAATTGCTTTGGTGTCGGAAACATTGTACAATAATAAACCTTGATCCCAACTACGATTGGTTTTATGGATCTGATTATTGGCTGCCAT

Coding sequences of Glyma02g43980

Limit To All Plant Sequences

>Glyma02g43980.3   sequence type=CDS   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGGATAAGATCTTCAAGCTAGCGAAGGGGTTCAGGGGTAGAGCCAAGAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAGGCCTTGCAATATTCCTACAGAGACCGCCGTAACAAAAAGAGGGACATGCGATCCCTTTGGATCCAAAGGATCAATGCTGGTACCCGCATTCATGGGGTCAACTATGGGAACTTCATGCATGGGCTGATGAAGGAGAATATCCAACTTAACAGAAAGGTTCTGTCAGAGATATCTATGCACGAACCCTATAGCTTCAAGTCTTTGGTAGATATATCACGAAATGCATTTCCCGGAAACAAGAATGTGGTGATTCCTCCTAGAAAGGTGGCCTTTTAG

>Glyma02g43980.4   sequence type=CDS   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGGATAAGATCTTCAAGCTAGCGAAGGGGTTCAGGGGTAGAGCCAAGAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAGGCCTTGCAATATTCCTACAGAGACCGCCGTAACAAAAAGAGGGACATGCGATCCCTTTGGATCCAAAGGATCAATGCTGGTACCCGCATTCATGGGGTCAACTATGGGAACTTCATGCATGGGCTGATGAAGGAGAATATCCAACTTAACAGAAAGGTTCTGTCAGAGATATCTATGCACGAACCCTATAGCTTCAAGTCTTTGGTAGATATATCACGAAATGCATTTCCCGGAAACAAGAATGTGGTGATTCCTCCTAGAAAGGTGGCCTTTTAG

>Glyma02g43980.5   sequence type=CDS   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGGATAAGATCTTCAAGCTAGCGAAGGGGTTCAGGGGTAGAGCCAAGAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAGGCCTTGCAATATTCCTACAGAGACCGCCGTAACAAAAAGAGGGACATGCGATCCCTTTGGATCCAAAGGATCAATGCTGGTACCCGCATTCATGGGGTCAACTATGGGAACTTCATGCATGGGCTGATGAAGGAGAATATCCAACTTAACAGAAAGGTTCTGTCAGAGATATCTATGCACGAACCCTATAGCTTCAAGTCTTTGGTAGATATATCACGAAATGCATTTCCCGGAAACAAGAATGTGGTGATTCCTCCTAGAAAGGTGGCCTTTTAG

Predicted protein sequences of Glyma02g43980

Limit To All Plant Sequences

>Glyma02g43980.3   sequence type=predicted peptide   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRIHGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVAF*

>Glyma02g43980.4   sequence type=predicted peptide   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRIHGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVAF*

>Glyma02g43980.5   sequence type=predicted peptide   gene model=Glyma02g43980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRIHGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVAF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain