SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27170 | AT | Annotation by Michelle Graham. TAIR10: Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204 | SoyBase | E_val: 0 | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0000785 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0008278 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cohesin complex | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016363 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear matrix | SoyBase | N/A | ISS |
| GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0964 | KOG | Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) | JGI | ISS | |
| PTHR18937 | Panther | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | JGI | ISS | |
| PTHR18937:SF8 | Panther | RAD50 - RELATED | JGI | ISS | |
| PF02463 | PFAM | RecF/RecN/SMC N terminal domain | JGI | ISS | |
| PF06470 | PFAM | SMC proteins Flexible Hinge Domain | JGI | ISS | |
| UniRef100_B9SUJ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosome, putative n=1 Tax=Ricinus communis RepID=B9SUJ2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336F40 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336F40 related cluster n=1 Tax=unknown RepID=UPI0002336F40 | SoyBase | E_val: 0 | ISS |
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Glyma02g43970 not represented in the dataset |
Glyma02g43970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g04930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g271900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g43970.1 sequence type=CDS gene model=Glyma02g43970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACATCAAGCAGGTTGTGATTGAAGGTTTTAAGAGTTATCGAGAGCAAATTGCTACAGAGCCTTTCAGTTCTAAAGTTAATTGTGTTGTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTCCATGCCATCCGTTTTGTGTTAAGTGATCTCTTTCAAAACCTACGCGGTGAAGATAGGCAGGCACTTCTCCATGAAGGAGCTGGACACCAGGTTTTATCTGCGTTCGTGGAGATTGTGTTTGATAATTCAGACAATCGTATCCCGGTTGACAAGGAGGAAGTGCGCTTGCGCCGGACTATAGGTTTCAAAAAGGATGAGTATTTTCTAGATGGAAAGCACATAACAAAAACTGAAGTGATGAATTTGCTGGAGAGTGCTGGGTTCTCCCGATCAAATCCTTATTATGTTGTACAACAAGGAAAGATAGCATCACTAACCTTGATGAAAGACTCTGAACGACTGGACTTGCTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGTCGCGAAAGTTTGAAAATAATGCATGAAACTGGTAATAAAAGAAAGCAAATAATCCAAGTTGTACAGTATTTAGATGAAAGGTTGAAAGAACTAGATGAGGAGAAGGAGGAACTTAGAAAATATCAGCAGCTTGACAAGCAAAGAAAATCCTTGGAATATGCTATTTATAGCAAAGAAGTTCAAGATGCTCAGCAAAAACTTACAGAGATAGAAGATGCTCGGGCCAAGGTTTCTGACACATCAGCAAGGAAGTATAATGATGTTCTTGATGCACATGAGAAATCCAAAGATTTAGAGAATACATTAAAAGATGTAACGAAAGAACTTCAAAACTTTAACAAAGAGAAAGAGGTTATTGAAAAGCGACGAACAGTGGCATTAAAGAAGCACACAGAGCTTGAGCTTGATGTCAAAGACTTGCAAGAGAAGATCTCTGGAAATACCCGAGCCAAAGAAGATGCTGCAAGACAACTGGAGATACTTGAGAAAGAAATTCAAGATTCAACTGCTGAACTGGGCAAAATTGTTCCTTTACATGAAGATCAAGTTCAGAAAGAAAAAGACATTGTCAAACGAATAATGGAGCGTGAGAAGAAACTCAGTATACTTTATCAAAAACAAGGACGTGCAACCCAGTTTTCAAGTAAAGCTTCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACGAGTGCATTCTTCAAACAAGGGGCAGGAGCAAAAGCTTTTGGATGAAATTGATCGGCTTAAAGAAGAACTACAGGATTGTGATGAGAACATAAACAGACGTAAATCAGAAATTACTACTTTGGAATCTCTCATTGCTCAGTCACGTGAAGGGCTTAATCGTTACAAAGAAGAGAGAGACAAGTTACATGGGGAGAGAAAGTCCCTATGGGGCAAAGAGAATGAACTTACTGCTGAAATTGATAAGCTGAGAGCTGAAGTTGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCTGGTGATGTGAGAAGAGGGTTGAATTCAGTTAGGAAGATCTGCAGGGAGTATAACATTTCTGGAGTTCATGGTCCAATTATTGAGTTGCTGAATTGTGATGAAAAGTTTTTCACTGCTGTTGAAGTTACTGCAGGAAACAGCTTATTTCATGTGGTTGTTGAAAATGATGACAAGTCAACCCAGATAATTAGACATCTTAATTCACAGAAAGGTGGTCGAGTTACATTTATTCCACTTAACAGAGTAAAGGGTCCACGCATCACTTATCCACAGAGTTCGGATGTCATACCTCTTTTAAAGAAATTGAACTTTAAACATGACTATACTCCTGCATTCAGTCAGGTCTTTGCTAGAACAGTTATCTGCAAGAATTTGGATGTGGCTTCAAGGGTTGCTCGTTCTGATGGTCTGGACTGCATAACACTGGATGGTGATCAAGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTATGATCACAGACGATCAAGATTGAGGTTTATGAATATCATTAAGCAGAATGCAGACACTATTCATATTAGAGAGGAGGAATTGGAGAAAGTTAGATTTAATCTACAAGAGATAGACCAAAAGATTAATGAAATTGTTGCTGAGCAGCAGAAGATTGATGCCAAATGTGCTCATGACAAATCTGTGATTGAACAGCTTAAGCAGGATATTGCTAATGCTAATAAGCAGAAGCTGTTGATTTCTAAAGCACTTACAAAAAAGGAGAAGTCTGTTGGGGATGTCCAGAATCAAATTGAACAGCTTAATGCTAGTATCGCTATGAAGAAAGCTGAGATGGGCACTGAGCTCATTGATCATTTAACACCAGAGGAGAAAAAGCTTTTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGACTGATCGCATTGAGACTGAAGCACGGAGAGCAGAGCTGGATACCAATCTAACCACTAACCTTAGGAGAAGGAAACAAGAGCTGGAGGCTGTAATATCATCTGCAGATGCTGACTCTTTGGTTGCTGATGCTGAATCAAAGTGGCAGGAACTTAGTGATGCTAAAATATTGGTTGATGATGCAATAGGGCAGCTTAGAAGTGTTACTGAAAGTATAAATGACCGAACACGACAAATTAAAAAGATCAAAGATGAATTGAATAAATTGAAGTCATTGGAGGATGAGTATGAAAGGAAACTTCAAGAAGATGCAAAAGAGTTAGAGCAATTGCAGAGTAAAAAAAACACATATGCTGCTAAAGAAGAGGAATATGCCAAGAAAATAAGGGAACTGGGACCATTGACATCAGATGCTTTTGAGGCGTATAGACGAAGGAATATTAAAGATTTGCACAAAATGCTGCACAGGTGCAATGAGCAATTGCAGCAGTTCAGTCATGTAAACAAGAAAGCCCTTGACCAGTATATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGACAGGCTGAACTTGATGCAGGAGATGAGAAAATTAAGGAGCTAATAACAGTGCTAGATCAACGGAAGGACGAGTCAATAGAGCGCACTTTCAAAGGTGTTGCTAGGCATTTTCGGGAAGTATTTTCCGAACTTGTGCTGGGGGGACATGGTCATCTGGTTATGATGAAAAAGAAGGATGGTGATCATGATGACGACGAAGATGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAAAAGTACATTGGAGTGAAAGTGAAGGTCTCATTTACTGGACAAGGGGAGACACAGTCCATGAAGCAGTTGTCTGGGGGTCAAAAAACTGTTGTCGCCCTTACACTTATCTTTGCCATACAGCGATGTGATCCTGCTCCCTTTTATCTATTTGATGAGATCGATGCAGCGCTGGATCCACAGTACAGAACTGCTGTTGGAAATATGATTCGTCGCTTGGCTGACATAGCAAACACTCAATTTATCACAACAACATTCCGCCCGGAGCTAGTGAAAGTTGCTGATAAGATATACGGAGTAACACATAAAAACAGGGTCAGCCGTGTTAATGTTGTGTCTAAGGAAGATGCACTGGAATTTATTGAGCATGACCAGACGCACAATGCTGAATAA
>Glyma02g43970.1 sequence type=predicted peptide gene model=Glyma02g43970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYIKQVVIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRGEDRQALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGFKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMHETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIYSKEVQDAQQKLTEIEDARAKVSDTSARKYNDVLDAHEKSKDLENTLKDVTKELQNFNKEKEVIEKRRTVALKKHTELELDVKDLQEKISGNTRAKEDAARQLEILEKEIQDSTAELGKIVPLHEDQVQKEKDIVKRIMEREKKLSILYQKQGRATQFSSKASRDKWLQKEIDDLERVHSSNKGQEQKLLDEIDRLKEELQDCDENINRRKSEITTLESLIAQSREGLNRYKEERDKLHGERKSLWGKENELTAEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICREYNISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKGPRITYPQSSDVIPLLKKLNFKHDYTPAFSQVFARTVICKNLDVASRVARSDGLDCITLDGDQVSKKGSMTGGFYDHRRSRLRFMNIIKQNADTIHIREEELEKVRFNLQEIDQKINEIVAEQQKIDAKCAHDKSVIEQLKQDIANANKQKLLISKALTKKEKSVGDVQNQIEQLNASIAMKKAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIETEARRAELDTNLTTNLRRRKQELEAVISSADADSLVADAESKWQELSDAKILVDDAIGQLRSVTESINDRTRQIKKIKDELNKLKSLEDEYERKLQEDAKELEQLQSKKNTYAAKEEEYAKKIRELGPLTSDAFEAYRRRNIKDLHKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIKELITVLDQRKDESIERTFKGVARHFREVFSELVLGGHGHLVMMKKKDGDHDDDEDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSKEDALEFIEHDQTHNAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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