SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06600 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004221 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity | SoyBase | N/A | ISS |
| GO:0004843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity | SoyBase | N/A | ISS |
| KOG1863 | KOG | Ubiquitin carboxyl-terminal hydrolase | JGI | ISS | |
| PTHR24006 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24006:SF110 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00443 | PFAM | Ubiquitin carboxyl-terminal hydrolase | JGI | ISS | |
| PF00917 | PFAM | MATH domain | JGI | ISS | |
| PF12436 | PFAM | Ubiquitin-specific protease 7 | JGI | ISS | |
| UniRef100_B0BLB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CM0545.290.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB2_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JIM7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIM7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g43930 not represented in the dataset |
Glyma02g43930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g04890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g271500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g43930.1 sequence type=CDS gene model=Glyma02g43930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGTGATGACTCCTGCTCCCATTGACCAGCAGCAGGAGGACGAGGAGATGCTTGTCCCGCACACGGATTTGGCTGAGAATAATCACCAACCTATGGAAGTTGTGGCTCAACCTGATGCTGCCAACACTGTGGAGAGTCAGCCTGTCGAGGATCCTTCGACATCAAGGTTCACATGGAAAATTGAAAACTTTTCTAGGATGAATACAAAGAAGCTCTATTCAGAAATATTTGTTGTTGGTGGTTATAAATGGCGAGTACTCATTTTCCCAAAAGGGAACAACGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGCTGGAGTAGATATGCACAGTTTAGCTTGGCAGTCGTTAATCAAATCCATAATAAATACTCTGTGAGAAAAGACACACAGCACCAATTCAATGCGCGGGAAAGTGATTGGGGTTTCACGTCTTTCATGCCACTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGAATGATACTCTTGTAGTTGAAGCTGAGGTTCTTGTTCGTAGAATTGTTGATTACTGGACCTATGATTCAAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTTCAAACTTTGTACCATATTCCTTATTTTCGAAAGGCTGTATACCATATGCCAACAACAGAGAATGACATGCCGTCGGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAGGAGCTCACTAAATCTTTCGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTCTGTGAAAAACTTGAAGATAAGATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCATCATATGAACTATATCGAATGCATCAATGTGGACTATAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTGAAAGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAAGGGGATAACAAATATCATGCGGAACAATATGGTTTGCAGGATGCTAAGAAGGGTGTCCTGTTCATTGATTTCCCTCCTGTTCTTCAGCTTCAACTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTCAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAATATTTATCACCTGACGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGCGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACTCTATCTGAGCAGTGGTATAAATTTGATGATGAGAGGGTGACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAAGAGTTACCGCAGACAAATCCTGGATTTAACAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAAGCAGAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGATGAAGACCTTGCAGAGCAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAACAGACATCTTTTAACCTTTTTAAGGACGAGGTGGCTAAAGAGTTTGGAATACCAGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGGCAAAACCATACGTATCGTCCAAATCGACCATTGACACACATGGAAGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCCAACAAAGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAGCTTGGGCTGGATTTACGTCCCATTGCACCGCCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGATACTGAAAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAAGGCTACTGGTAAGCCATCAGAAATTTTAACCAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTATACGAGGAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTATTGATAAGAAAGTAACATTTCGAGCAAGCCAGTTAGAAGATGGAGATATTATATGCTTTCAGAAAGCTCCTGCTATAGACAATGAACACGTCCGCTATCCAGATGTGCCTTCATACCTTGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGATCTCTAGAAAAACCAAAGGAAGATGACTTCTGCCTGGAGATGTCAAGGCTCTATACATATGATGATGTGGTGGAGAAAGTGGCTCAACAACTTGGTTTGGATGATCCATCCATAATTAGGCTTACCCCTCACAATTGCTACTCTCAACAACCAAAACCCCAACCTATTAAGTATCGTGGTGTGGAACATTTGTCTGATATGCTGGTTCACTACAATCAGACTTCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAACTACAAGGATTGAAAACTCTGAAAGTTGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGGGATGTCCTTAATGATCTGAAAACAAAGGTGGAATTGTCTGATCCTGAAGCCGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATACAAGGTCTTCCCTCCCAATGAAAAGATTGAAAGTATAAATGATCAATACTGGACATTACGTGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTGGGTCCTCATGATCGTCTAATCCATGTGTATCATTTCACTAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCCTTTTTCTTGGTCATACATGAAGGGGAGACTTTGGCTGAAATTAAAGTAAGAATACAGAAGAAACTTCAAGTCCCTGATGATGAGTTTGTCAAGTGGAAATTTGCCTTTTTTTCATTAGGGCGTCCTGAATACCTTCAGGATTCTGACATTGTGTCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGTTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGTTAACCAGAATCGCCATACTTTCGAGAAGCCAGTAAAGATTTATAATTAA
>Glyma02g43930.1 sequence type=predicted peptide gene model=Glyma02g43930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTVMTPAPIDQQQEDEEMLVPHTDLAENNHQPMEVVAQPDAANTVESQPVEDPSTSRFTWKIENFSRMNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLVVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLAEQIGKDIYFDLVDHDKVRSFRVQKQTSFNLFKDEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHMEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPPDKTKDDILLFFKLYDTEKEELRYVGRLFVKATGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDKKVTFRASQLEDGDIICFQKAPAIDNEHVRYPDVPSYLEYVHNRQVVHFRSLEKPKEDDFCLEMSRLYTYDDVVEKVAQQLGLDDPSIIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLNDLKTKVELSDPEAELRLLEVFYHKIYKVFPPNEKIESINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLAEIKVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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