Glyma02g43860 - SoyBase

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Report for Sequence Feature Glyma02g43860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48554184
stop:	48559779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g43860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21630	AT	Annotation by Michelle Graham. TAIR10: chitin elicitor receptor kinase 1 \| chr3:7615543-7618530 REVERSE LENGTH=617	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0002752	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell surface pattern recognition receptor signaling pathway	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0032491	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of molecule of fungal origin	SoyBase	N/A	ISS
GO:0032499	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of peptidoglycan	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0071219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0071323	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to chitin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008061	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitin binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0019199	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:2001080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitosan binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF421	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_D8KWQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Nod-factor receptor 1A n=1 Tax=Glycine max RepID=D8KWQ2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D8KWQ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nod-factor receptor 1A n=1 Tax=Glycine max RepID=D8KWQ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g43860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g43860

Paralog	Evidence	Comments
Glyma14g05060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g43860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g270800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g43860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g43860

Limit To All Plant Sequences

>Glyma02g43860.1   sequence type=CDS   gene model=Glyma02g43860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTCAAAAAAGGGTTACTTGTGTTCTTTTTGCTGCTGGAGTGTGTTTGTTACAATGTGGAATCCAAGTGTGTGAAGGGATGTGATGTAGCTTTCGCTTCCTACTATGTCAGTCCGGATTTAAGCTTAGAAAATATAGCGCGGTTGATGGAATCAAGCATTGAAGTTATAATCAGCTTCAATGAAGACAATATATCGAATGGTTATCCGCTATCCTTTTACAGACTCAATATTCCATTCCCCTGTGACTGTATTGGTGGTGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTTCTGCAGGTGACACCTATGATTCGATTGCGAAAGTGACATACGCCAATCTCACCACCGTTGAGCTTTTGCGGAGGTTCAATGGCTATGATCAAAATGGTATACCTGCAAATGCCAGGGTTAATGTCACGGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCAAAAGATTATGGGATGTTTATTACCTATCCACTCAGGCCTGGGAATAATTTGCATGATATTGCCAATGAGGCTCGTCTTGATGCACAGTTGCTGCAGCGTTACAATCCTGGTGTCAATTTCAGCAAAGAGAGTGGGACTGTTTTCATTCCAGGAAGAGATCAACATGGAGACTATGTTCCCTTGTACCCGAGAAAAACAGGTCTTGCTAGGGGTGCTGCAGTTGGAATATCTATAGCAGGAATATGCAGTTTTCTATTATTAGTAATTTGCTTATATGGCAAGTACTTCCAGAAGAAGGAAGGAGAGAAAACTAAATTGCCAACAGAAAATTCTATGGCGTTTTCAACTCAAGATGTCTCTGGAAGTGCAGAATATGAAACTTCAGGATCCAGTGGGACTGCTAGTGCTACTGGCCTCACAGGCATTATGGTGGCAAAATCAATGGAGTTCTCATATCAAGAACTAGCCAAGGCTACAAATAACTTTAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTGAGAGGCGAGAAAACTGCAATTAAGAAGATGGATGTGCAAGCATCGACAGAATTTCTTTGCGAGTTGAAGGTCTTAACTCACGTTCATCACTTTAATCTGGTGCGCTTGATTGGATATTGTGTTGAGGGATCCCTTTTCCTTGTATATGAATATATTGACAATGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGCCATGGTCTGGTCGAGTGCAAATTGCGCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTGCCTGTGTATATCCATCGTGATGTAAAATCAGCAAATATATTAATAGACAAGAACATCCGTGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAGGCTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACATTTCTCCAAAAGTAGATGTATATGCTTTTGGAGTGGTTCTTTATGAACTTATTTCTGCAAAGAATGCTGTTCTAAAGACAGGTGAATCTGTTGCTGAATCAAAGGGCCTTGTAGCTTTGTTTGAAGAAGCACTTAATCAGAGTAATCCTTCAGAAAGTATTCGCAAACTGGTGGATCCTAGGCTTGGCGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCTCAACTTGGGAGAGCTTGTACAAGAGATAACCCACTACTACGCCCGAGTATGAGGTCTATAGTTGTTGCTCTCATGACACTTTCATCACCTACTGAGGATTGCGACACTTCCTACGAAAATCAGACTCTCATAAATCTACTGTCTGTGAGATGA

Predicted protein sequences of Glyma02g43860

Limit To All Plant Sequences

>Glyma02g43860.1   sequence type=predicted peptide   gene model=Glyma02g43860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKKGLLVFFLLLECVCYNVESKCVKGCDVAFASYYVSPDLSLENIARLMESSIEVIISFNEDNISNGYPLSFYRLNIPFPCDCIGGEFLGHVFEYSASAGDTYDSIAKVTYANLTTVELLRRFNGYDQNGIPANARVNVTVNCSCGNSQVSKDYGMFITYPLRPGNNLHDIANEARLDAQLLQRYNPGVNFSKESGTVFIPGRDQHGDYVPLYPRKTGLARGAAVGISIAGICSFLLLVICLYGKYFQKKEGEKTKLPTENSMAFSTQDVSGSAEYETSGSSGTASATGLTGIMVAKSMEFSYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHFNLVRLIGYCVEGSLFLVYEYIDNGNLGQYLHGTGKDPLPWSGRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNIRGKVADFGLTKLIEVGGSTLHTRLVGTFGYMPPEYAQYGDISPKVDVYAFGVVLYELISAKNAVLKTGESVAESKGLVALFEEALNQSNPSESIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDTSYENQTLINLLSVR*

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