SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17680 | AT | Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR-NBS-LRR class), putative | chr5:5822999-5827153 FORWARD LENGTH=1294 | SoyBase | E_val: 1.00E-157 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| KOG4658 | KOG | Apoptotic ATPase | JGI | ISS | |
| PTHR11017 | Panther | LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR11017:SF20 | Panther | DISEASE RESISTANCE PROTEIN | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| PF01582 | PFAM | TIR domain | JGI | ISS | |
| UniRef100_G7J7A7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TIR-NBS-LRR-TIR type disease resistance protein n=1 Tax=Medicago truncatula RepID=G7J7A7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336BD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336BD0 related cluster n=1 Tax=unknown RepID=UPI0002336BD0 | SoyBase | E_val: 0 | ISS |
|
Glyma02g43630 not represented in the dataset |
Glyma02g43630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g05321 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g268900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g43630.2 sequence type=CDS gene model=Glyma02g43630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTACGTGGAGAATCTTCCTCAAACTCTTGGCGATGGACATACCATGTTTTCTTGAGTTTTAGAGGAGAAGACACCCGTTTAGATTTTACAGATCACTTGTACGCTGCGTTGGTGCGAAAGGGAATCATAGCTTTTCGAGATGACAAACAACTCGAGAAAGGAGATGCGATTGCAGAAGAACTCCCTAAAGCAATTGAGGAGTCCCTTGGTGCCATAGTCATTCTCTCTGAGAACTATGCTTCTTCCTCTTGGTGTTTGGATGAGCTCAACAAAATTCTTGAATCAAATAGAGTTCTGGGGAGGGAAGTTTTTCCTGTCTTCTATGGGGTTAGTCCTGGTGAGGTTCAACACCAGAAGACCCAGAGTTTTTATGAGGCTTTTAAGAAACATGAAAGAAGATCTGGGAAAGACACAGAAAAGGTGCAAAAATGGAGAGATTCCTTGAAGGAACTTGGCCAAATTCCTGGTTGGGAGTCCAAACATTATCAGCATCAAACAGAGCTCATTGAAAATATTGTTGAATCGGTATGGACAAAACTTCGTCCTAAAATGCCATCTTTCAATGATGGGCTAATTGGAATTGGCTCTAGAGTTAAGAAAATGGATTCACTTCTAAGCATAGAATCGGAGGACGTTCGCTTTATCGGAATATGGGGCATGGGTGGCATTGGAAAGACAACAGTAGCGAGAGTTGTCTTCCAGAAAATCAAGGATCAGTTTGATGTTAGCTGCTTCCTTGACAACGTTAGAGAGATTTCTAGAGAAACCAATGGCATGCTTCGCTTGCAAACAAAACTTCTGTCTCATTTGGCAATAAAAGGCTTAGAAATTATCGATTTGGACGAAGGAAAGAACACAATAATAAACCTTTTATCCGAGAAGAAAGTTTTACTTGTCCTTGATGATGTTGATGACACTAGCCAACTAGGTAATTTGGCTAAGAGGGTAGAATGGTTTGGACGTGGGAGCAGAGTTATAATCACAACAAGAGACACACAAGTATTAATATCACATGGAGTAGTTGAAAATTACAACATTGAGTTCTTAAATTCGGATGAATCCCTTCAACTCTTGAGTCAGAAAGCCTTCAAAAGAGATGAACCTCTAGAGCATTATTTGGAGTTGTCAAAAGTTGTAGCCAAACATGCTGGAGGCCTTCCTTTGGCCTTGGAGCTTTTAGGTTCATTTCTTTGTGGAAGAAGTGAATTCCAATGGAGAGAAGTTGTGGATATGATAAAAGAAGTCTCTGCCAGTCATATTGTGATGAAATCGCTTAGAATAAGCTACAATGGGTTACCACGATGTCATAAAGCTTTGTTTCTTGATATTGCATGCTTCTTCAAAGGGAGGGTAAAAGAGCTTGCAACACAAACTCTAGAAATTTGTGACCGCTATCCAGCAGTTGGAATTGAACTTCTAGTTGAAAAATCATTGGCAACTTACGATGGCTTTACTATAGGGATGCATGACTTGCTTCAAGAAACAGCAAGGGAAATTGTTATAGAAGAATCTCATGTAGATGCTGGAAAACGTAGTAGGTTATGGTCTCTAGAGGACACAAATCAAGTATTAAAATACAGTAGGGAAAATGAATCGATTGAAGGCATAGCTTTGAACTCACCCGAAAAGGACGAAGCAAACTGGGATCCTGAAGCATTCTCAAGGATGTATAATCTTCGGCTACTTATCATAAGTTTTCCTATAAAACTTGCTCGTGGCCTCAAATGTCTTTGCAGTTCATTGAAATTTCTTCAGTGGAATGACTTTTCTTTGGAAACTCTGCCGCTTGGTGTGCAGCTAGATGAACTTGTAGAGTTGAAAATGTATTCCAGCAAAATAAAAAATATTTGGAATGGAAATCAAGCTTTTGCAAAGCTGAAGTTCATTGATTTGAGCTATTCTGAAGATCTAATTCAAACTCCAATAGTTTCTGGGGCTCCATGTCTTGAAAGAATGCTTCTTATAGGTTGTATAAACCTTGTTGAGGTTCACCCTTCAGTTGGACAGCACAAGAGACTTGTTGTATTGTGCATGAAGAACTGCAAAAATCTTCAAATCATGCCAAGAAAATTGGAAATGGATTCTTTGGAGGAATTGATTCTTTCTGGCTGCTCAAAGGTTAAAAAACTCCCAGAATTTGGAAAGAATATGAAATCTTTATCACTGCTTAGTGTGGAGAATTGCATAAATCTTCTTTGCCTACCAAATTCTATTTGCAATTTGAAATCTCTTAGAAAACTCAACATTTCTGGCTGCTCAAGATTGTCAACACTGCCTAATGGTTTGAATGAAAATGAGTCTTTGGAGGAGCTTGATGTGAGTGGCACAGCTATAAGAGAAATTACTTTATCAAAAGTTCGTTTAGAAAAACTTAAAGAGCTCTCCTTTGGTGGAAGGAAAGAACTAGCACCCAACTCACAAAACTTGCTTCTATGGATCTCAAAGTTTATGAGGCAACCAAATCTGAAGGAGTCAACCATGCCTCCTCTTTCCAGCTTACTTGCCTTGGTGTCCTTGGATTTAAGTTACTGCGACCTTAACGATGAATCATTTCCTAGCCACCTTGGTTCTCTATCATTGTTGCAGGATTTAGATCTAAGTGGTAACAATTTTGTTAACCCACCTGCCCAGTGCATTATTAATCTTTCTATGTTGCAGAATTTGTCCTTCAATGATTGCCCAAGACTTGAATCCTTGCCAGTGCTTCCACCAAATTTACAAGGCTTGTATGCAAATAATTGTCCTAAATTGAAACCATTTAATTTGGATGAAGAAATGCTATGGAAGATATATGAGACACAATCACGTATGGATCCGATTGAAGGGCCCGAGGTTTGGTTCATCATACCAGGGAATGAAATTCCATGTTGGTTTGACAATCAAAACTGCCTTGCAATTGATTCATCACATCATCCATATGACAAGTTGGGTTGTGATTCAGTTACATCAATAACAGTGGATGTACCTAAGGATTGCCAGTTAAGTAAATGGTGGGGAATTGCAGTATGCCTAGTATTAGAACCTTCAAATATGGAGGAGGAGGACTCATCTCGATCTTATGTGAGACCAACTTCTACAGGAAATGAGGAAATGTGCATTTATTATTGGGTCTGTAAAGCTCCTGATCGAGACCCTGACCCAAAGTTTCCTATAGCATCCAAGTTTGGACACTTGGTTTACAAACTCAATGACCCTTACATCCATATTATATTCTTGAGTGCTGATCATGTATATATTCAGCATTATCTAAGTGGGGAGCAAATCCAACTCCAATTGATATTTTTTGTGGAGAATTGTTCTAAGTCATGTAAGGCAACAATAAAGAAGTGCGGGTGCCGTGTGGTATGTAAGGAAAAAATTGAAGAATGGCGCAAGCACTCAGATGGTCTTAATATATCAAGATTAACAGAAGTGAATGATGATGAGGAATTTCGTCGTGAATTGGTGGTGGAAGAGCCTACTTCTCCAAATACATTCTCTTCAACGGACAAAACAGCAGTAAACACTGCCCTTGATTGTGATAATGCATAA
>Glyma02g43630.2 sequence type=predicted peptide gene model=Glyma02g43630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRGESSSNSWRWTYHVFLSFRGEDTRLDFTDHLYAALVRKGIIAFRDDKQLEKGDAIAEELPKAIEESLGAIVILSENYASSSWCLDELNKILESNRVLGREVFPVFYGVSPGEVQHQKTQSFYEAFKKHERRSGKDTEKVQKWRDSLKELGQIPGWESKHYQHQTELIENIVESVWTKLRPKMPSFNDGLIGIGSRVKKMDSLLSIESEDVRFIGIWGMGGIGKTTVARVVFQKIKDQFDVSCFLDNVREISRETNGMLRLQTKLLSHLAIKGLEIIDLDEGKNTIINLLSEKKVLLVLDDVDDTSQLGNLAKRVEWFGRGSRVIITTRDTQVLISHGVVENYNIEFLNSDESLQLLSQKAFKRDEPLEHYLELSKVVAKHAGGLPLALELLGSFLCGRSEFQWREVVDMIKEVSASHIVMKSLRISYNGLPRCHKALFLDIACFFKGRVKELATQTLEICDRYPAVGIELLVEKSLATYDGFTIGMHDLLQETAREIVIEESHVDAGKRSRLWSLEDTNQVLKYSRENESIEGIALNSPEKDEANWDPEAFSRMYNLRLLIISFPIKLARGLKCLCSSLKFLQWNDFSLETLPLGVQLDELVELKMYSSKIKNIWNGNQAFAKLKFIDLSYSEDLIQTPIVSGAPCLERMLLIGCINLVEVHPSVGQHKRLVVLCMKNCKNLQIMPRKLEMDSLEELILSGCSKVKKLPEFGKNMKSLSLLSVENCINLLCLPNSICNLKSLRKLNISGCSRLSTLPNGLNENESLEELDVSGTAIREITLSKVRLEKLKELSFGGRKELAPNSQNLLLWISKFMRQPNLKESTMPPLSSLLALVSLDLSYCDLNDESFPSHLGSLSLLQDLDLSGNNFVNPPAQCIINLSMLQNLSFNDCPRLESLPVLPPNLQGLYANNCPKLKPFNLDEEMLWKIYETQSRMDPIEGPEVWFIIPGNEIPCWFDNQNCLAIDSSHHPYDKLGCDSVTSITVDVPKDCQLSKWWGIAVCLVLEPSNMEEEDSSRSYVRPTSTGNEEMCIYYWVCKAPDRDPDPKFPIASKFGHLVYKLNDPYIHIIFLSADHVYIQHYLSGEQIQLQLIFFVENCSKSCKATIKKCGCRVVCKEKIEEWRKHSDGLNISRLTEVNDDEEFRRELVVEEPTSPNTFSSTDKTAVNTALDCDNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
