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Report for Sequence Feature Glyma02g43391

Feature Type:gene_model
Chromosome:Gm02
Start:48166372
stop:48170666
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g43391
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04970AT Annotation by Michelle Graham. TAIR10: lipid-binding serum glycoprotein family protein | chr1:1411216-1413431 FORWARD LENGTH=488 SoyBaseE_val: 2.00E-39ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0008289GO-mf Annotation by Michelle Graham. GO Molecular Function: lipid binding SoyBaseN/AISS
PTHR10504Panther BACTERICIDAL PERMEABILITY-INCREASING (BPI) PROTEIN JGI ISS
PTHR10504:SF15Panther BACTERICIDAL /PERMEABILITY-INCREASING PROTEIN-RELATED JGI ISS
PF01273PFAM LBP / BPI / CETP family, N-terminal domain JGI ISS
UniRef100_G7K498UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bactericidal permeability-increasing protein n=1 Tax=Medicago truncatula RepID=G7K498_MEDTR SoyBaseE_val: 3.00E-27ISS
UniRef100_UPI0002336BCBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336BCB related cluster n=1 Tax=unknown RepID=UPI0002336BCB SoyBaseE_val: 3.00E-90ISS

Expression Patterns of Glyma02g43391
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g43391 not represented in the dataset
Glyma02g43391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g43391 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g266100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g43391
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g43391
>Glyma02g43391.1   sequence type=CDS   gene model=Glyma02g43391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTTTCTTTGTTCTGTTTCTATTAGCCTCTTCATTGACTCAAGGGTATGCTCAATTTCAACTCAAAAACGAAGCTTTTATATCCCTGTTGATTACCCAAAATGGCCTTGACTTTATGAAGGAGTTGCTGGTGAACAAGGCGATTTCCTCACTGGCCTCACTTGGATTGCCGAATATTGAAAAGACTGTGAAAATCCCAGTAGTGGGTAGTGTCTACATGGTGCTCTCTAACATCTCAAGTTATCATATTGATGTTCCTTCCTCGCATGTCAAGCCAGGGGAGACTGGAATTTCCATAATAGCTTCTGGGGTTACTTGTAATTTGAGCATCAATTGGTATTACTCTTATAGTACATGGTTTGTGCCTGTTAAGACATCTGACAGAGATAGGGCAGAAGTTCAGAAAGGAATTTGA
Predicted protein sequences of Glyma02g43391
>Glyma02g43391.1   sequence type=predicted peptide   gene model=Glyma02g43391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFFVLFLLASSLTQGYAQFQLKNEAFISLLITQNGLDFMKELLVNKAISSLASLGLPNIEKTVKIPVVGSVYMVLSNISSYHIDVPSSHVKPGETGISIIASGVTCNLSINWYYSYSTWFVPVKTSDRDRAEVQKGI*






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