Glyma02g43220 - SoyBase

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Report for Sequence Feature Glyma02g43220

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48044344
stop:	48046189
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g43220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11090	AT	Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 21 \| chr3:3475036-3475533 FORWARD LENGTH=165	SoyBase	E_val: 9.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K270	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K270_MEDTR	SoyBase	E_val: 1.00E-91	ISS
UniRef100_UPI0002336E2F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336E2F related cluster n=1 Tax=unknown RepID=UPI0002336E2F	SoyBase	E_val: 2.00E-138	ISS

Expression Patterns of Glyma02g43220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g43220

Paralog	Evidence	Comments
Glyma14g06270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g43220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g264500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g43220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g43220

Limit To All Plant Sequences

>Glyma02g43220.2   sequence type=transcript   gene model=Glyma02g43220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAAATAGTATTATTTTTTTATCAAAAGCAAATAAAATAAATGCAGTAAAAAGACAGCATTGGCCCATGCAAGTCCAGCGACCTAGCTGAGCTAATAGGCAAGGAAACGTGGTTGCCCTTAAATAGCGATTGAGCAAAATACCTGTCTCGAGAGAACCATATACTTATAAGGGCAAACACTATAGTAAAGTGGAAATTTGAGAGAATTGAGATTGAGAACGAGATCGAGCCATGAAGGGTTATTATGAGCCACGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTCTTGAAGAGAAGGTGCATACCCAATTGCATATTTGCACCGTACTTTCGCTCTGACGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTCGGGGCAAGCAATGTGAGCAAGATCCTCGTTGAGGTTCCTGAGGAACAGAGAGAGGACACGGTGAATTCACTTGCTTATGAGGCGGAAGCACGGCTTCGGGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGCTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATGCTACTGCTGCTGCTACTGCTACCACCACCCCTTCTAATTCCACTTCTCATGATGCCTTCTTTAATGCCCACGTTAGTTTGCCACCCTTCCCTGATTTTTACACTTGGGCTGATAATTTCAATAATAATAATGACAACTTCTGCCACACCTCTTCTTCTCAATCATCATGGACCAGACATGAAACGGTGGATGATTTTATTCAAACCCCATATATATTTTGAGATTTAATGTTAGTTAATTATGATCCTCCCCCCAACCCCCCCCCCCCCCTCCCCCTTTCTCTCTTT

Coding sequences of Glyma02g43220

Limit To All Plant Sequences

>Glyma02g43220.1   sequence type=CDS   gene model=Glyma02g43220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTTATTATGAGCCACGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTCTTGAAGAGAAGGTGCATACCCAATTGCATATTTGCACCGTACTTTCGCTCTGACGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTCGGGGCAAGCAATGTGAGCAAGATCCTCGTTGAGGTTCCTGAGGAACAGAGAGAGGACACGGTGAATTCACTTGCTTATGAGGCGGAAGCACGGCTTCGGGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGCTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATGCTACTGCTGCTGCTACTGCTACCACCACCCCTTCTAATTCCACTTCTCATGATGCCTTCTTTAATGCCCACGATTTTCACGGTCGATGA

>Glyma02g43220.2   sequence type=CDS   gene model=Glyma02g43220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTTATTATGAGCCACGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTCTTGAAGAGAAGGTGCATACCCAATTGCATATTTGCACCGTACTTTCGCTCTGACGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTCGGGGCAAGCAATGTGAGCAAGATCCTCGTTGAGGTTCCTGAGGAACAGAGAGAGGACACGGTGAATTCACTTGCTTATGAGGCGGAAGCACGGCTTCGGGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGCTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATGCTACTGCTGCTGCTACTGCTACCACCACCCCTTCTAATTCCACTTCTCATGATGCCTTCTTTAATGCCCACGTTAGTTTGCCACCCTTCCCTGATTTTTACACTTGGGCTGATAATTTCAATAATAATAATGACAACTTCTGCCACACCTCTTCTTCTCAATCATCATGGACCAGACATGAAACGGTGGATGATTTTATTCAAACCCCATATATATTTTGA

Predicted protein sequences of Glyma02g43220

Limit To All Plant Sequences

>Glyma02g43220.1   sequence type=predicted peptide   gene model=Glyma02g43220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGYYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYATAAATATTTPSNSTSHDAFFNAHDFHGR*

>Glyma02g43220.2   sequence type=predicted peptide   gene model=Glyma02g43220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGYYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYATAAATATTTPSNSTSHDAFFNAHVSLPPFPDFYTWADNFNNNNDNFCHTSSSQSSWTRHETVDDFIQTPYIF*

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