Glyma02g43190 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g43190): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g43190): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g43190

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48023678
stop:	48026120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g43190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46510	AT	Annotation by Michelle Graham. TAIR10: plant U-box 13 \| chr3:17124106-17126539 REVERSE LENGTH=660	SoyBase	E_val: 1.00E-81	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0070696	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase binding	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF31	Panther	OS06G0102700 PROTEIN	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_E4NKF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase n=1 Tax=Medicago truncatula RepID=E4NKF8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337B55	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337B55 related cluster n=1 Tax=unknown RepID=UPI0002337B55	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g43190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g43190 not represented in the dataset	Glyma02g43190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g43190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g264200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g43190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g43190

Limit To All Plant Sequences

>Glyma02g43190.2   sequence type=CDS   gene model=Glyma02g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATGTTCTATCCGCGATGATGGTCTCCCCAGGCTTGTTACCATCAGGGACTTTGCTAGATTCTCTGATTCATGTGTGCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTGGTACACACAAGAAACGTTTCAACCATGATAAGGAGGATCAAACTTCTCTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTCCCTCCTTCCTCGATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTCAAAGTTTTGATCCAAGATTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATATCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTTCCTTGAGTTTGCTTAATGTAACCTCAGATATTAAGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCACCGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAAGAAGGGGCTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGTAGCATTGGTTTGAGAACTCCATCAGATTATGAAGAGGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGATTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGATGTGCTATTCCAAATCCATGATATTCAAAGAAGGAGAGAGTGATACAAAAGAAGATTGGCACTCTTATGATAGAATCTCAATTGCACAATGGATAAACTCTGGTCATCACACATGCCCCAAAAGTGGGCAAAGGCTAATTCACACGGCTCTCATACCAAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCAGTGGATGAGCCTACCACCGAAGGAAACAAGAACAGCAGCAAGAAGTTGAAGGAAGATGCTGTAGACCATATTTCTGCAAACAAAGCCGCTGCGGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAGCTTCGGTTACTCACAAAAACTGGCATGGTTAACCGAAGCGTCATAGCCGAGGTAGGGGCTATTCCCTTTCTTGTAACACTCCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCCATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGACAGCATAGTGGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGTTTGTCTATGGTGGATGAGTGCAAAGTGCAAATTGGAGGAAGGCCAAGGGCAATACCTGCCTTAGTCGAACTCTTGAAAGAAGGAACTCCAATAGGGAAAAGAGATGCTGCAAGTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGTTGCTCTGAGGGGCTAG

Predicted protein sequences of Glyma02g43190

Limit To All Plant Sequences

>Glyma02g43190.2   sequence type=predicted peptide   gene model=Glyma02g43190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNVLSAMMVSPGLLPSGTLLDSLIHVCNEVGSMEKFPLVHTRNVSTMIRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILSLSLLNVTSDIKEQVELLHKQAKRAELLIDPRELHRREQLIQVMANNSLQNKKKKGLVDFGKVEEILSSIGLRTPSDYEEEISKLEAEAQNQAGTGGLIVVSNINNLISLMCYSKSMIFKEGESDTKEDWHSYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVDEPTTEGNKNSSKKLKEDAVDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLTKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRPRAIPALVELLKEGTPIGKRDAASALFNLAVYNPNKVALRG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain