SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| PF04043 | PFAM | Plant invertase/pectin methylesterase inhibitor | JGI | ISS | |
| UniRef100_B9SE94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C, putative n=1 Tax=Ricinus communis RepID=B9SE94_RICCO | SoyBase | E_val: 2.00E-09 | ISS |
| UniRef100_UPI0002337B4C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337B4C related cluster n=2 Tax=unknown RepID=UPI0002337B4C | SoyBase | E_val: 6.00E-113 | ISS |
|
Glyma02g43047 not represented in the dataset |
Glyma02g43047 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g262700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g43047.1 sequence type=CDS gene model=Glyma02g43047 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTCTTTAACGCTATTTCTCCCCTTTTGCTTGATCCTCATTACCAATTCTCCTTCGCTGACAAATGCTAATGGTTCTGACCTAATTTCCCAAATTTGCAAGGAACCCTCAATAAACCAAAAAGAATGCACGGACATCCTGACAGCTTATCCTAGAACTATGCATGCAAATAACTTTTTTGAACTTGCAGAGGCGATCTTGCAGTTGTCCTTATACAAGGCAATAGAAGGACAGAAGTTTCTTAGGACATTGATGAAGACGGAAAATGTTCCAGCCATTGCACAATGTGCAAACTCTGACTATGAAAGTGTGATTACAGCGTATAAGAGTGCTCTAAGCAAGTTGAAAGACGATCCTAAAACTGCTAAGCATTATGCCATAGATGCTGGTGATGGTCCTGTTTCCTGTGAGGCAGCCTTGGCTGATACACCTGTTTATTTTAACTTCGAAATTTCTAATCTTAACATCCAAATGGGGTCGCTTAGCTATATTGCAACCCTAGCCATAGATAAACTTATTATTTAG
>Glyma02g43047.1 sequence type=predicted peptide gene model=Glyma02g43047 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSLTLFLPFCLILITNSPSLTNANGSDLISQICKEPSINQKECTDILTAYPRTMHANNFFELAEAILQLSLYKAIEGQKFLRTLMKTENVPAIAQCANSDYESVITAYKSALSKLKDDPKTAKHYAIDAGDGPVSCEAALADTPVYFNFEISNLNIQMGSLSYIATLAIDKLII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
